Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31229
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6769| Best HMM Match : rve (HMM E-Value=3.5e-19)                    29   2.9  
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_50134| Best HMM Match : Sorting_nexin (HMM E-Value=6.3)             28   6.7  
SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)             28   6.7  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_46637| Best HMM Match : Toxin_16 (HMM E-Value=1.6)                  27   8.8  
SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_15601| Best HMM Match : Toxin_16 (HMM E-Value=0.24)                 27   8.8  

>SB_6769| Best HMM Match : rve (HMM E-Value=3.5e-19)
          Length = 577

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 235 INAKDLNLPGPAYGGSWENGKLVLSWPVSDVLMVLQHY 348
           +N KD  +P  AY G WE  KL  +   + +    QH+
Sbjct: 383 LNGKDFLIPVDAYSGFWEVMKLTQATAANVINKTKQHF 420


>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 220 RQEVLINAKDLNLPGPAYGGSWENGKLVLSWPV 318
           R + L + +D  +P P Y GS  NG L+ +W V
Sbjct: 22  RNKSLGDIRDNAVPPPKYKGSGNNGLLLQTWSV 54


>SB_50134| Best HMM Match : Sorting_nexin (HMM E-Value=6.3)
          Length = 310

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 34  KPVPASRNCLENETLKIPKSGFASEDDQAFVFHYAMQTQAAKDAMDELNKYGP 192
           KPVPA RN  E +   +PK  F        +F   M+ +  + A +E   + P
Sbjct: 186 KPVPAPRNKPELKPKPVPKPRFEETTGNDDLFRPDMKAREEEKAKEEKELFVP 238


>SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)
          Length = 622

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 425 LR*IHRLRQIYLLRQIIHLRQIYRLRQICH 514
           +R ++ +R +Y +  + H+R +Y +R +CH
Sbjct: 127 VRWLYHVRWLYHVSWLYHVRWLYHVRWLCH 156


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 425 LR*IHRLRQIYLLRQIIHLRQIYRLRQICH 514
           +R ++ +R +Y +  + H+R +Y +R +CH
Sbjct: 30  VRWLYHVRWLYHVSWLYHVRWLYHVRWLCH 59


>SB_46637| Best HMM Match : Toxin_16 (HMM E-Value=1.6)
          Length = 131

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 374 DFGFVCCPL*CCKT 333
           D GF CCP+ CC++
Sbjct: 19  DRGFTCCPVTCCRS 32



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 374 DFGFVCCPL*CCKT 333
           D GF CCP+ CC++
Sbjct: 49  DRGFTCCPVTCCRS 62


>SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 335 TIKTSETGHDKTSFPFSQDPP*AGPGRFKSLA 240
           T  TS  GHD T+F  S+D P  G   F SL+
Sbjct: 472 TACTSPDGHDSTAFTLSKDHPDRG-NSFMSLS 502


>SB_15601| Best HMM Match : Toxin_16 (HMM E-Value=0.24)
          Length = 358

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 374 DFGFVCCPL*CCKT 333
           D GF CCP+ CC++
Sbjct: 6   DRGFTCCPVTCCRS 19



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 374 DFGFVCCPL*CCKT 333
           D GF CCP+ CC++
Sbjct: 126 DRGFTCCPVTCCRS 139



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 374 DFGFVCCPL*CCKT 333
           D GF CCP+ CC++
Sbjct: 186 DRGFTCCPVTCCRS 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,390
Number of Sequences: 59808
Number of extensions: 296674
Number of successful extensions: 840
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)