Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31229
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.3  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 178 NKYGPGANNTTGHRRQEVLINAKDLNLPGPAYGGSW 285
           N Y    NN      +  +IN + + +P P Y G++
Sbjct: 103 NNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 178 NKYGPGANNTTGHRRQEVLINAKDLNLPGPAYGGSW 285
           N Y    NN      +  +IN + + +P P Y G++
Sbjct: 103 NNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 443 LRQIYLLRQIIHL 481
           L+QI++L Q+IHL
Sbjct: 7   LQQIFILLQMIHL 19


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 201 ISTRPVFVKLIHSIFSRLS-LHCVVKH 124
           +ST+P F+  +HS F  +  L+ V+++
Sbjct: 40  LSTKPPFLVQLHSCFQTMDRLYFVMEY 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,709
Number of Sequences: 438
Number of extensions: 2837
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)