Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31229
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    30   1.0  
At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family...    29   2.4  
At4g10440.1 68417.m01716 dehydration-responsive family protein s...    29   3.1  
At3g54050.1 68416.m05976 fructose-1,6-bisphosphatase, putative /...    28   4.1  
At3g42600.1 68416.m04422 hypothetical protein                          28   4.1  
At1g53550.1 68414.m06076 F-box family protein similar to F-box f...    28   4.1  
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)...    28   5.5  
At5g08415.1 68418.m00991 lipoic acid synthase family protein sim...    27   9.6  

>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1234

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +1

Query: 40  VPASRNCLENE---TLKIPKSGFASEDDQAFVFHYA--MQTQAAKDAMDELNKYGPGANN 204
           +P  RN L+ +   TL++   G ASEDDQA   H A     +A  D    L   G    N
Sbjct: 406 MPGLRNKLDGKIQKTLRVSYDGLASEDDQAIFRHIACIFNFEACSDIKKLLEDSGLNVTN 465


>At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 615

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 91  SGFASEDDQAFVFHYAMQTQAAKDAMDELNKYGPGANNTTGHRRQEVLINAKDLNLPGPA 270
           S +  +D +  V  +    +  +D  +E N Y PG+ NTT     +V+ + KD+++    
Sbjct: 281 SPYPGQDSKQRVIIFGDMGKGERDGSNEYNDYQPGSLNTT----DQVIKDLKDIDIVFHI 336

Query: 271 YGGSWENGKL 300
              ++ NG L
Sbjct: 337 GDLTYSNGYL 346


>At4g10440.1 68417.m01716 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 633

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 270 LWWILGKWKASFVVASLRRLDGFATLQWAANESKIKSSYTDVLSVRSHDR 419
           L+++LG W+A+ V +S+ +L        +++ S   SS +  L  +SH++
Sbjct: 31  LFYVLGAWQANTVPSSISKLGCETQSNPSSSSSSSSSSESAELDFKSHNQ 80


>At3g54050.1 68416.m05976 fructose-1,6-bisphosphatase, putative /
           D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative
           / FBPase, putative strong similarity to
           fructose-1,6-bisphosphatase [Brassica napus] GI:289367;
           identical to SP|P25851 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Arabidopsis thaliana}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 417

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = +1

Query: 61  LENETLKIPKSGFASEDDQAFVFHYAMQTQAAKDAMDELNKYGPGANNTTGHRRQEVLIN 240
           L  E ++IPK+G     ++    +Y M     K  +D+L   GP     +      ++ +
Sbjct: 280 LTQENIEIPKAGRIYSFNEG---NYQMWDDKLKKYIDDLKDPGPTGKPYSARYIGSLVGD 336

Query: 241 AKDLNLPGPAYG----GSWENGKLVLSWPVSDVLMVLQHYNGQQTNPKSRV 381
                L G  YG       +NGKL L +  + +  +++   G+ ++  SRV
Sbjct: 337 FHRTLLYGGIYGYPRDAKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHSRV 387


>At3g42600.1 68416.m04422 hypothetical protein
          Length = 219

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +1

Query: 130 HYAMQTQAAKDA----MDELNKYGPGANNTTG 213
           HY + T+  +D+    MDE+ +Y P  NNT G
Sbjct: 141 HYPLGTEETRDSCEQFMDEIKQYRPTYNNTYG 172


>At1g53550.1 68414.m06076 F-box family protein similar to F-box
           family protein TIGR_Ath1:At3g23960
          Length = 408

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 189 PVFVKLIHSIFSRLSLHCVVKHECL 115
           P+ V L+ +I SRLSL C+ +  C+
Sbjct: 34  PIPVDLVINILSRLSLECIARCRCV 58


>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
           Similar to Arabidopsis luminal binding protein
           (gb|D89342); contains Pfam domain PF00012: dnaK protein
          Length = 678

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 294 SIFPRSTISRTWQVQIFGVYQDLLSSMTSGV 202
           +I PR+T+  T + Q+F  YQD  +++T  V
Sbjct: 457 NIIPRNTVIPTKKSQVFTTYQDQQTTVTINV 487


>At5g08415.1 68418.m00991 lipoic acid synthase family protein
           similar to lipoic acid synthase from Arabidopsis
           thaliana [gi:3928758], from Mus musculus [gi:14669826]
           Pfam profile PF04055: radical SAM domain protein
          Length = 394

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 352 HCSVAKPSRRLRLATTKLAFHFPK 281
           HCS+ KP+  + ++T KL  H  K
Sbjct: 4   HCSITKPTFSISISTQKLHHHSSK 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,418,302
Number of Sequences: 28952
Number of extensions: 209673
Number of successful extensions: 615
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)