Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31228
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   3.6  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   3.6  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   3.6  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   6.2  

>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 80  KTFINMNVDPERINITTCNFRVYDKVKY 163
           K+  N N+DP+ + +T+  F  +D V+Y
Sbjct: 220 KSIFNFNMDPDALRLTSLGF--FDFVQY 245


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 214 KFTFNLFLFFKSNFIRFL*SHYPF 285
           K TF L  FF + F RFL   YP+
Sbjct: 379 KSTFTLRQFFHNEFPRFLPHAYPY 402


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 177 LLVIPYLTLS*TLKLHVVILILSGSTFMFIN 85
           +LV PYL  S    L   +L   GS FM+IN
Sbjct: 523 VLVAPYLYQSGAFMLIGFVLACFGSYFMYIN 553


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 195 FQKRFSKIYL*SFF--IF*IKLYKIPLITLSFCF*LSFFIPFGDNFIAIITK 344
           F++    IY   FF  I   K +  PL+ L +C  +S F+   D F  ++ K
Sbjct: 87  FEQVAPAIYKHGFFFSICNEKAWTQPLVFLYYCAYISKFLELTDTFFLVLRK 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,351,629
Number of Sequences: 5004
Number of extensions: 23966
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)