Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31228
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical p...    28   3.1  
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical
           protein C17G10.7 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +1

Query: 229 LFLFFKSNFIRFL*SHYPFVFNYHSLFLSETILLQSLQNS 348
           L +FF + F+ FL S Y  ++N+  +FLS  +LL+ + +S
Sbjct: 53  LLMFFVNTFVVFL-SMYG-LYNFRPVFLSPNVLLKIILSS 90


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 223 FNLFLFFKSNFIRFL*SHYPFVFNYHSLFLSETILLQSL 339
           F+LF FF  NFI F  SH+ F      L   ET+  Q +
Sbjct: 316 FSLFSFF--NFITFSTSHFHFHNKIKFLLEGETVYKQKI 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,300,063
Number of Sequences: 27780
Number of extensions: 128410
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)