Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31224
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.65 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   2.0  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   2.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   2.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   6.1  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = +2

Query: 113 DPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFS-KG 289
           D   + G L         D R + G  P+QQ+   E C     + +    +   C   KG
Sbjct: 153 DELSQPGSLNGYGSSDGCDARKKKGPTPRQQE---ELCLVCGDRASGYHYNALTCEGCKG 209

Query: 290 YCSQSLIYEEASDCPEGNDC 349
           +  +S+       C  GN+C
Sbjct: 210 FFRRSITKNAVYQCKYGNNC 229


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 32  LLFCAMCILFYGNSEDDFCEIDSIEQEDPCRR 127
           LLF AM  +     ED+F  ++  E E+   R
Sbjct: 9   LLFMAMVAIMAAPVEDEFEPLEHFENEERADR 40


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 32  LLFCAMCILFYGNSEDDFCEIDSIEQEDPCRR 127
           LLF AM  +     ED+F  ++  E E+   R
Sbjct: 9   LLFMAMVAIMAAPVEDEFEPLEHFENEERADR 40


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = +2

Query: 185 GLCPKQQKDGIECCYGVSVKETRCRKHGGEC 277
           G+C +  +     C G S ++  C K    C
Sbjct: 77  GICAEGMQCSCNKCIGCSAEKFECSKTSNPC 107


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 189 SVLSSKKTESNAVTECP*KRPDVGSTAENVSRKATAVNL*YMKKLQTV 332
           ++ +  +TESNA +     R   G+T E +  +    N+   ++ Q++
Sbjct: 222 TIENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSL 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,745
Number of Sequences: 438
Number of extensions: 2567
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)