Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31222
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1048 + 10770461-10770612,10770721-10770730,10771457-107716...    27   6.3  
01_06_0639 + 30772804-30772904,30773386-30775675                       27   6.3  
05_06_0002 - 24788373-24788466,24788540-24788787                       27   8.4  

>12_01_1048 +
           10770461-10770612,10770721-10770730,10771457-10771624,
           10771668-10772017,10772107-10772508,10772940-10773318,
           10773801-10774046
          Length = 568

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 350 GNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 249
           G   CRR +S  ++  GHS++ T    V  F +N
Sbjct: 174 GEACCRREKSQAIAGPGHSIAVTTSGAVYTFGSN 207


>01_06_0639 + 30772804-30772904,30773386-30775675
          Length = 796

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 126 RQDNDNIGVEGYNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTY 293
           R+  +N GV GY TG+   +G     +G   N     +A + R ++ Y GP G +Y
Sbjct: 221 RRQGNNSGVSGYGTGHH-YHGSDTYRSGY--NTQNNQQAYDSR-QYGY-GPSGQSY 271


>05_06_0002 - 24788373-24788466,24788540-24788787
          Length = 113

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 499 FFFFFFYLNVCIII 458
           FFFFFF+  VC+++
Sbjct: 10  FFFFFFFFCVCVLV 23


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,185,591
Number of Sequences: 37544
Number of extensions: 169616
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)