Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31221
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.061
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 27 1.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 3.0
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 7.0
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 25 7.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 24 9.3
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 24 9.3
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 24 9.3
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 31.5 bits (68), Expect = 0.061
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +2
Query: 137 PDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQG--SSGYTAPDGTPIQITYIADANG 310
PD + G G+E + G A+ +G S GYT+P + + Y +
Sbjct: 1500 PDAAAFSPLVQGGSEGRE--GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS 1557
Query: 311 YQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 406
Y PS T+PA +P P Y + Y T P
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 1.3
Identities = 20/84 (23%), Positives = 32/84 (38%)
Frame = +2
Query: 107 QIVSQDADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQI 286
Q+ ++ +D+ PD S G E + + + V SS + G +
Sbjct: 96 QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGAASL 155
Query: 287 TYIADANGYQPSGAHLPTTPAPLP 358
T+ A GY P+ T P P P
Sbjct: 156 TFAAARRGYGPALPGSYTIPEPNP 179
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 3.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 197 ALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAP 352
AL+ G S VQ + YT+ G P T +A A + +G ++ +P
Sbjct: 43 ALLPTGLLMGSPFVQSPTSYTSMHGLPFSTTQMAAAPAHPTTGYNVSRVTSP 94
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 7.0
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 229 GCILTALVYERSLFLATDSVAGLILVLVF-VRENVSILRHNLGISFASAHDVRNVSDGYR 53
G I +YE L D +G++L +VF ++++ S+ + + +S + V + +R
Sbjct: 54 GYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFR 113
Query: 52 DQSE 41
+ E
Sbjct: 114 SEVE 117
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -2
Query: 174 PLLV*Y-WYWYLSGKTSASCD 115
PL+ Y WYW L + + SCD
Sbjct: 214 PLMQQYEWYWRLEPEVTFSCD 234
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 7.0
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +2
Query: 221 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 400
D + S G+ P P + + + Y+P ++L + PAP P P Y +
Sbjct: 826 DEMASPSSSIGHPLPSPPPADFNSL-NVDFYEPH-SYLES-PAPEPQPSYEEESFNATVI 882
Query: 401 HPPKP 415
H P P
Sbjct: 883 HAPTP 887
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 24.2 bits (50), Expect = 9.3
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Frame = +2
Query: 203 VNEGRED--ASIAVQGSSGYTAPDGT---PIQITYIADANGYQPSGAHLPTTPAPLP 358
V+ RED SIA S + T P + P + LPT P PLP
Sbjct: 624 VHNNREDDEVSIASTSSKSNVEMEDTRLLPASLELANTQGASNPPTSALPTVPVPLP 680
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -3
Query: 281 EWEYHQGQCSRLNLG-RRWM 225
+WEY G C+ + +G + WM
Sbjct: 202 QWEYQVGPCAGIEMGDQLWM 221
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = -2
Query: 276 GVPSGAV*PLEPWTAMDASSRPSFTSAPCSWPLI 175
G+P+ + + A+ A PCSWP I
Sbjct: 226 GLPADHPIMQKEYNAIQADVEAELAGGPCSWPQI 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,483
Number of Sequences: 5004
Number of extensions: 34355
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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