Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31221
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    96   1e-22
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.6  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.1  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 96.3 bits (229), Expect = 1e-22
 Identities = 51/112 (45%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
 Frame = +2

Query: 95  EADAQIVSQDADV-FPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDG 271
           + DA I SQ  +V F   Y   ++TSNGIS QE G       E   ++ QGS  YTAPDG
Sbjct: 24  DKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDG 82

Query: 272 TPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPEVGQ 427
             + ITY+AD NG+Q  G+H+PT P   PIP  I RA+E+   HP + + GQ
Sbjct: 83  QQVSITYVADENGFQVQGSHIPTAP---PIPPEIQRALEWNAAHPEEDDGGQ 131


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 240 WTAMDASSRPSFTSAPCSWPL 178
           WTA +A +   FTSA   W +
Sbjct: 804 WTAPEAIAFRKFTSASDVWSM 824


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 79  VRNVSDGYRDQSEEDVSSHFECVL 8
           + +V+DG  +  +E+V  + EC +
Sbjct: 44  INDVNDGKINIEDENVQLYIECAM 67


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 304  GVSNVSDLNGSTIRGSVAA*TLDGDGCILTALVYERS 194
            GV +V     ST+RG     +L  D    TAL+ + +
Sbjct: 1232 GVGSVEKTGVSTLRGQERQRSLFKDSSPATALMLQHA 1268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,214
Number of Sequences: 438
Number of extensions: 2612
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)