Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31215
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0427 + 24142474-24142502,24143679-24143739,24146678-241470...    28   4.1  
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804...    28   4.1  
10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754...    27   7.2  
08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338...    27   7.2  
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674...    27   7.2  
02_02_0246 - 8243584-8243696,8243848-8244415,8244500-8244685,824...    27   9.5  

>03_05_0427 +
           24142474-24142502,24143679-24143739,24146678-24147022,
           24147651-24147929,24149063-24149230
          Length = 293

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 357 LKWIRIQLLKLQKSSPDTPQPDTVRDTLAXXPD 259
           L WIR  +L LQ++ P TP P    D     PD
Sbjct: 99  LGWIRQAVLLLQRARPSTPPPKQA-DAKGTRPD 130


>01_06_1078 +
           34378985-34380064,34380155-34380283,34380362-34380430,
           34380536-34380588,34381309-34381421,34381565-34382132,
           34382520-34382580,34382624-34382665
          Length = 704

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 375 LESGVLLKWIRIQLLKLQKSSPDTPQPDTVRDTL 274
           L+ G+LL W+ ++  +LQ+      Q  T RDTL
Sbjct: 302 LQEGMLLSWLSMKQKRLQRGVQIILQIKTFRDTL 335


>10_07_0195 +
           13972656-13972970,13973518-13973848,13975312-13975463,
           13975573-13976280,13976424-13976615,13977264-13977425
          Length = 619

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 285 ALCQVXECXVNFSGVLIVEYGSILIA-LLIPSQ 380
           AL +V EC +N  G L V Y +I++A +L PS+
Sbjct: 124 ALLRVYECIINDDG-LDVRYNNIVVARILTPSE 155


>08_01_0381 -
           3382316-3382459,3382872-3382907,3383323-3383429,
           3383518-3383587,3383839-3384663,3384748-3385044,
           3385175-3385501,3385760-3386046,3386728-3386896
          Length = 753

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 339 QLLKLQKSSPDTPQPDTVRDTLAXXPDRSRYNDLFRTLNPLKARN 205
           QL  L + +P  P   T +D L+         DLF +++   ARN
Sbjct: 383 QLSALYEDTPLLPYDSTDQDVLSMDSGAESLQDLFNSMDDSNARN 427


>02_02_0097 -
           6746934-6747005,6747372-6748325,6748421-6748435,
           6748592-6748984
          Length = 477

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = -2

Query: 387 IQIDLESGVLLKWIRIQLLKLQKSSPDTPQPDTVRDTLAXXP-DRSRYNDLFRTLNPLKA 211
           +Q  +E      + +  LL+     P T +P +   +L   P D +    L RT+ P+ A
Sbjct: 169 LQASVEQVFSEDFFQQSLLEELLQLPPT-RPSSSSSSLVGSPADGAASTSLLRTMTPMMA 227

Query: 210 RNTSDASDSAVGYSDATTTLTS 145
            +++  S   +    ATTT T+
Sbjct: 228 SSSATPSPRELAAQVATTTTTT 249


>02_02_0246 -
           8243584-8243696,8243848-8244415,8244500-8244685,
           8244772-8244804,8244901-8244999,8245091-8245330,
           8246130-8246447,8246589-8246646,8246788-8246846,
           8246888-8246960,8247004-8247219,8247326-8247495
          Length = 710

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 396 RKYIQIDLESGVLLKWIRIQLLKLQKSSPDTPQPD 292
           R+ I+ + E   +L    +Q LKL++S PD  QPD
Sbjct: 465 REIIEENREDSNILMNNLVQKLKLRESLPDMNQPD 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,164,144
Number of Sequences: 37544
Number of extensions: 148257
Number of successful extensions: 286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)