Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31215
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_1115| Best HMM Match : NusG (HMM E-Value=2.4)                       27   9.7  

>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/71 (23%), Positives = 26/71 (36%)
 Frame = -2

Query: 318 SSPDTPQPDTVRDTLAXXPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLP 139
           +SP T QP T   T      +    +L  T  P   + T+    S    +    T T++P
Sbjct: 171 ASPSTKQPSTALTTTKQPTTQQTTTNLPSTRQPTTNQQTTTTLPSTKQPTTTQQTTTTIP 230

Query: 138 EIRNSMARAQT 106
             +      QT
Sbjct: 231 STKQPTTTQQT 241


>SB_1115| Best HMM Match : NusG (HMM E-Value=2.4)
          Length = 175

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = -2

Query: 396 RKYIQIDLESGVLLKWIRIQLLKLQKSSPDT-----PQPDTVRDTLAXXPDRSRYNDLFR 232
           R YI I  E+G  L+  R  LLK  + +P+       QPD+  +T     ++ R+    R
Sbjct: 105 RSYI-IQTETGQELRRNRRHLLKTNEQAPEVKLPEPEQPDSPTETPTAPKEQQRHQRTTR 163

Query: 231 TLNPLK 214
           T +P+K
Sbjct: 164 T-SPIK 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,934
Number of Sequences: 59808
Number of extensions: 188447
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)