Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31215
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81475-4|CAB03911.1|  323|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    27   4.9  
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81475-4|CAB03911.1|  323|Caenorhabditis elegans Hypothetical
           protein C24H11.4 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 273 LTCHALCQVXECXVNFSGVLIVEYGSILIALLIP 374
           L CH  C+      NF   L++  G +L+A+LIP
Sbjct: 118 LICHGKCENLALSRNFGVTLVISVG-MLVAILIP 150


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 384 QIDLESGVLLKWIRIQLLKLQKSSPDT--PQPDTVRDTLAXXPDR 256
           +I L   ++ K + +++LK   SS     PQP TV DT    P+R
Sbjct: 591 KIKLAFIIVTKRVNMRILKQGSSSKSAINPQPGTVVDTTVTRPER 635


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 384 QIDLESGVLLKWIRIQLLKLQKSSPDT---PQPDTVRDTLAXXPDR 256
           +I L   ++ K + +++LK Q SS D    PQP TV DT    P+R
Sbjct: 693 KIKLAFIIVTKRVNMRILK-QGSSLDNAINPQPGTVVDTTVTRPER 737


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,434,443
Number of Sequences: 27780
Number of extensions: 145832
Number of successful extensions: 356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)