Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31215
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   2.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 160  YNFNIITGDKEFYGTRTNLTSI 95
            YNF+ ++GD E  G    LT +
Sbjct: 1056 YNFSSVSGDGEEGGAELRLTGL 1077


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 160  YNFNIITGDKEFYGTRTNLTSI 95
            YNF+ ++GD E  G    LT +
Sbjct: 1052 YNFSSVSGDGEEGGAELRLTGL 1073


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 339 QLLKLQKSSPDTPQPDTVRDTLAXXP 262
           Q ++  KS   TP+PD + + L   P
Sbjct: 320 QYIRHIKSPYHTPEPDCIHELLGHMP 345


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 392 NTYKLTWNQECY 357
           N YKL WN E Y
Sbjct: 91  NDYKLKWNPEEY 102


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 392 NTYKLTWNQECY 357
           N YKL WN + Y
Sbjct: 78  NDYKLKWNPDDY 89


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/55 (18%), Positives = 23/55 (41%)
 Frame = +3

Query: 231 FETGRYIAIGPVCXLTCHALCQVXECXVNFSGVLIVEYGSILIALLIPSQFVCIF 395
           F     + +  VC  T H         V  +GV+ +  G +++  ++   ++ +F
Sbjct: 152 FAATSLLVVAEVCYFTAHVTHPRHRLCVFVAGVVFIVSGLLMLVGMV--MYISVF 204


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 392 NTYKLTWNQECY*NGSVFNY*NSRKVHXTLXNLTQCV 282
           NT +L   Q    NG V ++ N    H     L +C+
Sbjct: 436 NTERLQVGQYVTVNGDVVSHLNISSTHTNDGGLYKCI 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,088
Number of Sequences: 438
Number of extensions: 1877
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)