Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31214
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    29   0.27 
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    27   0.63 
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    24   5.9  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    24   5.9  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    24   7.8  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    24   7.8  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     24   7.8  

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 137 QWLFSRCLQSPSRLVNCVLCPN 72
           QW   +CL +P  ++ C  CP+
Sbjct: 235 QWFCKKCLLAPHEVICCAFCPD 256


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 235 ARECHVYSVDIWSPFRCAPIFSSVINCFAGLRYSGSS 125
           AR  H+  +D W PF C+ +   ++N     R SG S
Sbjct: 51  ARNLHITFID-WIPFLCSILGIVIVNSIDKSRLSGDS 86


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 190 RCAPIFSSVINCFA 149
           RC PIFS +I+ FA
Sbjct: 290 RCQPIFSRIISLFA 303


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +2

Query: 11  NTLILNNTRG--TKFYLTQTWQYWDIIHS*QGGMVTASTD*RATVPETCKTI 160
           N    NN  G  T F     ++YW       GG+  A TD    V +T  TI
Sbjct: 85  NKFFDNNLLGSRTNFMYADPFRYWWQSSDTMGGICIAHTDDNQRVMDTDDTI 136


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
          Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 94 STVYYVPILPG 62
          S VYY P+LPG
Sbjct: 10 SAVYYTPVLPG 20


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 53   SKILYPEYYLISK 15
            SK LYP+YY+I K
Sbjct: 1097 SKKLYPDYYMIIK 1109


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 208 DIWSPFRCAPIFSSVINCFAGLRYSGSSVGACSHH-PALSTVYYVP 74
           DIW+    A I    I C      S ++  A +HH PA +T   +P
Sbjct: 101 DIWTQVSKANISERKIRCVYSEGPSTANAHANAHHQPAQTTTTSIP 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,569
Number of Sequences: 5004
Number of extensions: 30006
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)