Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31214
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0008 + 12239759-12239923,12240404-12240443,12241278-122414... 28 2.3
10_08_0665 + 19688278-19688462,19688679-19688842,19688949-196891... 28 2.3
01_06_1328 + 36347963-36347984,36348609-36348764,36349083-363492... 28 2.3
08_02_1149 + 24706429-24708105 27 4.0
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 27 5.3
08_01_0395 - 3502750-3503033,3504844-3505663 27 5.3
03_05_1058 - 30014796-30014961,30015711-30016450,30016756-300168... 27 5.3
02_04_0243 + 21244743-21245837,21245921-21246148,21246240-212464... 27 5.3
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256... 27 5.3
11_04_0274 - 15667178-15667444,15668352-15668678,15669430-156695... 26 7.1
06_02_0166 + 12522172-12522890,12523567-12524596 26 7.1
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295... 26 9.3
>12_02_0008 +
12239759-12239923,12240404-12240443,12241278-12241435,
12242400-12242462,12243149-12243268,12243388-12243684,
12245012-12245335,12246411-12246680
Length = 478
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 179 GRASKRTPYINRVYMTLSSLRRYDG-CRYGQTCTFN 283
G + + TPY R+ S G CR+G TC FN
Sbjct: 79 GESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFN 114
>10_08_0665 +
19688278-19688462,19688679-19688842,19688949-19689112,
19689249-19689502,19690064-19690175
Length = 292
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = -3
Query: 279 KVQVCPYLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQVSG 139
++ C +LH + L + M +L++ G+RL+ + ++++ I+ VSG
Sbjct: 82 RLVTCIWLHAGVVHLLAN-MLSLVLIGLRLEQQFGYMRIGIIYLVSG 127
>01_06_1328 +
36347963-36347984,36348609-36348764,36349083-36349261,
36349347-36349442,36349525-36349594,36349635-36349705,
36350654-36351286
Length = 408
Score = 27.9 bits (59), Expect = 2.3
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 123 TEEPLYLRPAKQLIT---EEKMGAHL--NGLHISTEYT*HSLACEDMMDVGMDRPVPSTC 287
T EP L P K++ EE + A+L N LH+ TE T + D + ++RP +
Sbjct: 152 TCEPAILPPLKEIYEGNIEEGIAAYLYLNSLHLHTEMTVYDEEHLDEVKDPIERPDNAAR 211
Query: 288 TANIPMSERLKG 323
++ ER+ G
Sbjct: 212 AVDLKGLERIAG 223
>08_02_1149 + 24706429-24708105
Length = 558
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 117 APTEEPLYLRPAKQLITEEKMGAHLNGLHISTEYT*HSLACE 242
APTEE Y + + EEKM +H S +Y + CE
Sbjct: 10 APTEERAYSCGDEDITQEEKMLLQRFPIHESDDYEHEEVNCE 51
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 267 CPYLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQVSG 139
C +LH + L + M LL G+RL+ F+++ +V +SG
Sbjct: 120 CIWLHAGVVHLLIN-MLCLLFIGIRLEQEFGFVRIGLVYLISG 161
>08_01_0395 - 3502750-3503033,3504844-3505663
Length = 367
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 248 DGCRYGQTCTFNLHCQHTYERE 313
+GC YG CTF LH + + RE
Sbjct: 182 EGCPYGDACTF-LHDEQSKARE 202
>03_05_1058 -
30014796-30014961,30015711-30016450,30016756-30016887,
30017509-30018021,30019208-30019582
Length = 641
Score = 26.6 bits (56), Expect = 5.3
Identities = 7/19 (36%), Positives = 16/19 (84%)
Frame = -3
Query: 84 IMSQYCQVCVK*NFVPRVL 28
+M+++C +C++ NFV R++
Sbjct: 240 MMTEFCNICIERNFVDRMI 258
>02_04_0243 +
21244743-21245837,21245921-21246148,21246240-21246458,
21246557-21247000,21247440-21247547,21247790-21247909
Length = 737
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 145 LRYSGSSVGACSHHPALSTVYYVPILPG 62
L S S+ GA +HH LSTV ++PG
Sbjct: 93 LNKSYSTAGAPAHHHRLSTVDVPQVVPG 120
>01_01_0316 +
2565704-2566134,2566682-2566845,2566989-2567152,
2567594-2567720,2568347-2568450
Length = 329
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -3
Query: 267 CPYLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQVSG 139
C +LH + L + M +LL+ G+RL+ F+++ + +SG
Sbjct: 168 CIWLHAGVVHILAN-MLSLLLIGIRLEKEFGFMRIGTLYVISG 209
>11_04_0274 -
15667178-15667444,15668352-15668678,15669430-15669563,
15669669-15669726,15669842-15669961,15670814-15670876,
15671388-15671539,15673002-15673116,15673907-15673981,
15674474-15674538,15675020-15675128
Length = 494
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 179 GRASKRTPYINRVYMTLSSLRRYDG-CRYGQTCTFN 283
G A + PY R+ S G CR+G TC FN
Sbjct: 130 GEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFN 165
>06_02_0166 + 12522172-12522890,12523567-12524596
Length = 582
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 176 FFFSYQLFCRSQVQWLFSRCLQSPSRLVN 90
F SY LFC S V +F R +PS V+
Sbjct: 32 FTDSYDLFCISPVMKIFGRVYYAPSGSVD 60
>04_04_0670 -
27128153-27129075,27129152-27129266,27129348-27129537,
27129652-27129786,27129874-27129971,27131075-27131764
Length = 716
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 297 CWQCRLKVQVCPYLHPSYLRRLESVM 220
C+ + Q P LHPS +RRL S+M
Sbjct: 134 CYSIAVGGQDHPPLHPSSIRRLPSLM 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,403,146
Number of Sequences: 37544
Number of extensions: 183652
Number of successful extensions: 436
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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