Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31214
(347 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 6e-06
SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_11943| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 1.8
SB_8411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34) 28 2.4
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 27 5.5
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_17200| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35) 26 7.3
SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08) 26 7.3
SB_3287| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_50330| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-17) 26 9.7
SB_41655| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_270| Best HMM Match : PHD (HMM E-Value=0.0037) 26 9.7
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3) 26 9.7
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 46.4 bits (105), Expect = 6e-06
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -1
Query: 137 QWLFSRCLQSPSRLVNCVLCPN 72
QWL RCLQSPSR+V+CVLCPN
Sbjct: 298 QWLCRRCLQSPSRVVDCVLCPN 319
>SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1222
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 196 PFRCAPIFSSVINCFAGLRYSGSSVGACSHHP 101
PF C P ++ I + RY+ S+ C H P
Sbjct: 520 PFPCTPANNTKIKAWLLNRYASSTFNTCPHRP 551
>SB_11943| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 591
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 189 DARPFFLQLSIVLQVSGTVALQSVLAVTIPPCQLCIMSQYC 67
D R F ++ ++ Q+ + + S+L QLC++++YC
Sbjct: 228 DRRNFLSEIEMMKQLGKHLNIVSILGCVTHAGQLCLITEYC 268
>SB_8411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 135 LYLRPAKQLITEEKMGAHLNGLHISTEYT*HSLACEDMMDVGMDRPVPSTCTANI 299
LY P ++ E + H S YT + AC D+ D+G+ + + +C A+I
Sbjct: 52 LYTSPLGDIVREHGLSFHFYA-DDSQIYT--TFACNDISDLGVAKQLLESCVADI 103
>SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)
Length = 933
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 183 RPFFLQLSIVLQVSGTVALQSVLAVTIPPCQLCIMSQYC 67
R +++ V + T L + T PP +CI+SQYC
Sbjct: 475 RDMLIEMKQVRDIQHTNLLHYIGVCTTPP-NICIVSQYC 512
>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 27.1 bits (57), Expect = 4.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 269 TCTFNLHCQHTYEREIKRTH 328
TCT N+H QH + TH
Sbjct: 22 TCTLNMHTQHAHSTRSLNTH 41
Score = 27.1 bits (57), Expect = 4.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 269 TCTFNLHCQHTYEREIKRTH 328
TCT N+H QH + TH
Sbjct: 209 TCTLNMHTQHAHSTRSLNTH 228
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 196 PFRCAPIFSSVINCFAGLRYSGSSVGACSH 107
PF C P ++ I + RYS S+ C H
Sbjct: 292 PFPCTPANNTKIKAWLLNRYSSSTFNTCPH 321
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 211 VDIWSPFRCAPIFSSVINCFAGLRYSGSSVGACSHHPA 98
++ P C P F ++ + G S SS SH+P+
Sbjct: 14 IEAVDPSACVPTFDNMADTSVGAASSSSSEPTASHNPS 51
>SB_17200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 143 ETCKTIDN*R--KNGRASKRTPYINRVYMTLSSLRRYDGCRYGQTCTFNLHCQH 298
E C+ I+N R +N R + YI + + R + CRY + C + +C++
Sbjct: 70 ENCRYIENCRYIENCRYIENCRYIENCRY-IENCRYIENCRYIENCRYIENCRY 122
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 143 ETCKTIDN*R--KNGRASKRTPYINRVYMTLSSLRRYDGCRYGQTCTFNLHCQH 298
E C+ I+N R +N R + YI + + R + CRY + C + +C++
Sbjct: 76 ENCRYIENCRYIENCRYIENCRYIENCRY-IENCRYIENCRYIENCRYIENCRY 128
>SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)
Length = 806
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = -2
Query: 202 WSPFRCAPIFSSVINCFAGLRYSGSSVGACSHHPALSTVYYVPILP 65
+ P C ++ L+ S AC HHP YY P+ P
Sbjct: 13 YGPLACVHHPPECAQYYSPLQPSRYGPLACVHHPPECAQYYSPVQP 58
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 118 ACSHHPALSTVYYVPILP 65
AC HHP YY P+ P
Sbjct: 209 ACVHHPPECAQYYSPVQP 226
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 118 ACSHHPALSTVYYVPILP 65
AC HHP YY P+ P
Sbjct: 233 ACVHHPPECAQYYSPVQP 250
>SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08)
Length = 1201
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 196 PFRCAPIFSSVINCFAGLRYSGSSVGACSH 107
PF C P ++ + + RY+ S+ CSH
Sbjct: 563 PFPCTPANNTKMKAWLLNRYASSTFNTCSH 592
>SB_3287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1030
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 96 KAGW*LQAPTEEPLYLRPAKQLITEEKMGAHLNGLHISTEY 218
K GW + AP + + K + E +G LNGL + +Y
Sbjct: 915 KQGWPVPAPGKRGEKVDAYKGTVVEVPLGVVLNGLPLERKY 955
>SB_50330| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-17)
Length = 452
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 270 VCPYLHPSYLRRLESVMYTLLIYG 199
+ PY P LR + MYT++ G
Sbjct: 27 IAPYTEPESLRAIRLAMYTIVFLG 50
>SB_41655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 439
Score = 25.8 bits (54), Expect = 9.7
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -2
Query: 310 SLIGMLAVQVEGTGLSI----PTSIISSQARECHVYSVDIWSPFRCAPIFSSVINCFAGL 143
S+ G V G G++I PT+ I+ RE + I SP + + +NC A L
Sbjct: 302 SITGNTLHAVVGMGINISNSEPTTCINDIIREYNTSHNTILSPICLEMVLARTVNCMAKL 361
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Frame = -1
Query: 167 SYQLFCRSQVQWLFSRCLQSPSRLV-----NCVLCPNTARFVLSKIL 42
S +FC W+ +C P RL C C TA + S+ L
Sbjct: 795 SNSIFCSGCSLWVHKKCSNIPGRLTPNPLFRCSRCQGTAHLIDSRPL 841
>SB_270| Best HMM Match : PHD (HMM E-Value=0.0037)
Length = 251
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Frame = -1
Query: 167 SYQLFCRSQVQWLFSRCLQSPSRLV-----NCVLCPNTARFVLSKIL 42
S +FC W+ +C P RL C C TA + S+ L
Sbjct: 97 SNSIFCSGCSLWVHKKCSNIPGRLTPNPLFRCSRCQGTAHLIDSRPL 143
>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
Length = 1281
Score = 25.8 bits (54), Expect = 9.7
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -2
Query: 334 IIVCPFNLSLIGMLAVQVEGTGLSIPTSII 245
+I+C F L+++ ++ +G +PT+I+
Sbjct: 226 LIICIFKLTVLPFMSGSAKGAKYKVPTTIV 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,380,511
Number of Sequences: 59808
Number of extensions: 227254
Number of successful extensions: 683
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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