Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31214
(347 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l... 30 0.52
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p... 30 0.52
Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical pr... 29 0.69
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 29 1.2
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 29 1.2
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 29 1.2
Z81047-4|CAB02831.3| 364|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z82278-4|CAB05257.2| 487|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z81470-2|CAB03882.2| 422|Caenorhabditis elegans Hypothetical pr... 28 2.1
U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain (pr... 27 2.8
U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain (pr... 27 2.8
Z50070-6|CAA90395.1| 548|Caenorhabditis elegans Hypothetical pr... 27 4.9
AL117204-10|CAB55125.1| 196|Caenorhabditis elegans Hypothetical... 27 4.9
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 4.9
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 4.9
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 4.9
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 4.9
Z82267-5|CAB05193.1| 203|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z82261-4|CAB05147.1| 203|Caenorhabditis elegans Hypothetical pr... 26 6.4
U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain (pr... 26 6.4
U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain (pr... 26 6.4
AL117204-11|CAB55126.1| 201|Caenorhabditis elegans Hypothetical... 26 6.4
AL110495-2|CAB60410.1| 203|Caenorhabditis elegans Hypothetical ... 26 6.4
Z82278-3|CAB05255.1| 347|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical p... 26 8.5
Z78012-7|CAB01411.1| 284|Caenorhabditis elegans Hypothetical pr... 26 8.5
U41038-2|AAX88827.1| 635|Caenorhabditis elegans Serotonin/octop... 26 8.5
U41038-1|AAK29709.2| 683|Caenorhabditis elegans Serotonin/octop... 26 8.5
AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin rec... 26 8.5
AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin rec... 26 8.5
>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
lineage protein 49 protein.
Length = 1042
Score = 29.9 bits (64), Expect = 0.52
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 122 RCLQSPSRLVNCVLCPNT 69
RC SP+ VNCVLCP+T
Sbjct: 241 RCGISPAGRVNCVLCPST 258
>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
protein LIN-49 protein.
Length = 1042
Score = 29.9 bits (64), Expect = 0.52
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 122 RCLQSPSRLVNCVLCPNT 69
RC SP+ VNCVLCP+T
Sbjct: 241 RCGISPAGRVNCVLCPST 258
>Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical
protein C54G4.4 protein.
Length = 868
Score = 29.5 bits (63), Expect = 0.69
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 229 ECHVYSVDIWSPFRCAPIFSSVINCFAGLRYSGS 128
+ +VY+V+ SP++CA V+ F G+ Y+ S
Sbjct: 330 QVNVYAVNAVSPWQCAQSQMEVVGVFGGMCYAAS 363
>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
protein 104, isoforma protein.
Length = 1584
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 203 YINRVYMTLSSLRRYDGCRYGQTCTFNLHCQHTYEREIK 319
Y +++YMTLS+ DGC T +L C Y R+ K
Sbjct: 1178 YGDQIYMTLSAYMELDGCAQPAVVTKDL-CLLIYARDSK 1215
>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
protein 104, isoformb protein.
Length = 1628
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 203 YINRVYMTLSSLRRYDGCRYGQTCTFNLHCQHTYEREIK 319
Y +++YMTLS+ DGC T +L C Y R+ K
Sbjct: 1225 YGDQIYMTLSAYMELDGCAQPAVVTKDL-CLLIYARDSK 1262
>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
protein protein.
Length = 1584
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 203 YINRVYMTLSSLRRYDGCRYGQTCTFNLHCQHTYEREIK 319
Y +++YMTLS+ DGC T +L C Y R+ K
Sbjct: 1178 YGDQIYMTLSAYMELDGCAQPAVVTKDL-CLLIYARDSK 1215
>Z81047-4|CAB02831.3| 364|Caenorhabditis elegans Hypothetical
protein C41G6.6 protein.
Length = 364
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 264 PYLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQV 145
PY + L+ +E + +L+I G + FFL L ++Q+
Sbjct: 244 PYYDVATLKSVEIIFGSLIINGTNFEIIDFFLNLKYIIQL 283
>Z82278-4|CAB05257.2| 487|Caenorhabditis elegans Hypothetical
protein M162.5 protein.
Length = 487
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 187 CAPIFSSVINCFAGLRYSGSSVGACSHHPALSTVYYVPILPGLC 56
C P ++ + +A L G + A + LS+++ +PI LC
Sbjct: 159 CMPAVGAITSSWASLTQQGLFIAALTTFGQLSSIFSMPIAGELC 202
>Z81470-2|CAB03882.2| 422|Caenorhabditis elegans Hypothetical
protein C14A6.2 protein.
Length = 422
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 187 CAPIFSSVINCFAGLRYSGSSVGACSHHPALSTVYYVPILPGLC 56
C P ++ + +A L G + A + LS+++ +PI LC
Sbjct: 95 CMPAVGAITSSWASLTQQGLFIAALTTFGQLSSIFSMPIAGELC 138
>U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform a
protein.
Length = 915
Score = 27.5 bits (58), Expect = 2.8
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Frame = -2
Query: 280 EGTGLSIPTSIISSQARECHVYSV-------DIWSPFRCAPIFSSVINCFAGLRYSGSSV 122
E T + TSI SQAR C V DIW R + S+ C + Y +S
Sbjct: 757 ENTHFRVATSISPSQARSCKRCGVKHPAKQNDIWVEKRHLGLTSTYYTCTDNVVYDITSW 816
Query: 121 GACSHHPAL 95
C A+
Sbjct: 817 ATCKSQRAM 825
>U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform c
protein.
Length = 912
Score = 27.5 bits (58), Expect = 2.8
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Frame = -2
Query: 280 EGTGLSIPTSIISSQARECHVYSV-------DIWSPFRCAPIFSSVINCFAGLRYSGSSV 122
E T + TSI SQAR C V DIW R + S+ C + Y +S
Sbjct: 756 ENTHFRVATSISPSQARSCKRCGVKHPAKQNDIWVEKRHLGLTSTYYTCTDNVVYDITSW 815
Query: 121 GACSHHPAL 95
C A+
Sbjct: 816 ATCKSQRAM 824
>Z50070-6|CAA90395.1| 548|Caenorhabditis elegans Hypothetical
protein F43G6.6 protein.
Length = 548
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 122 RCLQSPSRLVNCVLCPNTARFVLSKILYPEYYLISKY 12
R ++ ++ + C C + F+ S + EYYLI K+
Sbjct: 28 RYRENDNKWITCYHCQTSYHFLCSGLEEYEYYLIDKF 64
>AL117204-10|CAB55125.1| 196|Caenorhabditis elegans Hypothetical
protein Y116A8C.19 protein.
Length = 196
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 239 RRYDGCRYGQTCTFNLHCQHTYE-REIKRTHNNF 337
RR C YG+ C F H H + K+TH N+
Sbjct: 93 RRGQKCIYGEQCKF-AHSVHELRFTQAKKTHRNY 125
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 90 VDKAGW*LQAPTEEPLYLRPAKQLITEEKMGAHLNGLHIS 209
V +GW +P E A Q++ +K+G N LHI+
Sbjct: 1597 VKDSGWGPYSPPERTKVTESAVQVLFVKKIGGSENSLHIN 1636
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 90 VDKAGW*LQAPTEEPLYLRPAKQLITEEKMGAHLNGLHIS 209
V +GW +P E A Q++ +K+G N LHI+
Sbjct: 1597 VKDSGWGPYSPPERTKVTESAVQVLFVKKIGGSENSLHIN 1636
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 90 VDKAGW*LQAPTEEPLYLRPAKQLITEEKMGAHLNGLHIS 209
V +GW +P E A Q++ +K+G N LHI+
Sbjct: 1597 VKDSGWGPYSPPERTKVTESAVQVLFVKKIGGSENSLHIN 1636
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 90 VDKAGW*LQAPTEEPLYLRPAKQLITEEKMGAHLNGLHIS 209
V +GW +P E A Q++ +K+G N LHI+
Sbjct: 1597 VKDSGWGPYSPPERTKVTESAVQVLFVKKIGGSENSLHIN 1636
>Z82267-5|CAB05193.1| 203|Caenorhabditis elegans Hypothetical
protein F38C2.7 protein.
Length = 203
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 239 RRYDGCRYGQTCTFNLHCQHTYE-REIKRTHNNF 337
RR C YG+ C F H H + KR H N+
Sbjct: 98 RRGQKCAYGEKCKF-AHSVHELRFPQTKRNHRNY 130
>Z82261-4|CAB05147.1| 203|Caenorhabditis elegans Hypothetical
protein C35D6.4 protein.
Length = 203
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 239 RRYDGCRYGQTCTFNLHCQHTYE-REIKRTHNNF 337
RR C YG+ C F H H + KR H N+
Sbjct: 98 RRGQKCAYGEKCKF-AHSVHELRFPQTKRNHRNY 130
>U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform b
protein.
Length = 849
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Frame = -2
Query: 280 EGTGLSIPTSIISSQARECHVYSV-------DIWSPFRCAPIFSSVINCFAGLRYSGSSV 122
E T + TSI SQAR C V DIW R + S+ C + Y +S
Sbjct: 757 ENTHFRVATSISPSQARSCKRCGVKHPAKQNDIWVEKRHLGLTSTYYTCTDNVVYDITSW 816
Query: 121 GAC 113
C
Sbjct: 817 ATC 819
>U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform d
protein.
Length = 868
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Frame = -2
Query: 280 EGTGLSIPTSIISSQARECHVYSV-------DIWSPFRCAPIFSSVINCFAGLRYSGSSV 122
E T + TSI SQAR C V DIW R + S+ C + Y +S
Sbjct: 757 ENTHFRVATSISPSQARSCKRCGVKHPAKQNDIWVEKRHLGLTSTYYTCTDNVVYDITSW 816
Query: 121 GAC 113
C
Sbjct: 817 ATC 819
>AL117204-11|CAB55126.1| 201|Caenorhabditis elegans Hypothetical
protein Y116A8C.20 protein.
Length = 201
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 143 ETCKTIDN*RKNGRASKRTPYINRVYMTLSSLRRYDGCRYGQTCTFNLHCQHTYE-REIK 319
+ C D R+ + KR + + LS +R C YG+ C F H H ++ K
Sbjct: 67 DPCTIPDELREEMKRMKRQEGAFKTALCLSH-KRGKTCIYGEQCKF-AHGVHELRCQQAK 124
Query: 320 RTHNNF 337
+ H N+
Sbjct: 125 KNHRNY 130
>AL110495-2|CAB60410.1| 203|Caenorhabditis elegans Hypothetical
protein Y60A9.3 protein.
Length = 203
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 239 RRYDGCRYGQTCTFNLHCQHTYE-REIKRTHNNF 337
RR C YG+ C F H H + KR H N+
Sbjct: 98 RRGQKCAYGEKCKF-AHSVHELRFPQTKRNHRNY 130
>Z82278-3|CAB05255.1| 347|Caenorhabditis elegans Hypothetical
protein M162.3 protein.
Length = 347
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 186 ARPFFLQLSIVLQVS-GTVALQSVLAVTIPPCQLCIMSQYCQVC 58
+R F+Q SI+ + GT + + LA+ P + Q C C
Sbjct: 237 SRSIFIQCSIICFFNTGTALVYNALAIVTPAEWILAFGQICWTC 280
>Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical
protein C25F9.13 protein.
Length = 224
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = -2
Query: 232 RECHVYSVDIWSPFRCAPIFSSVINCFAGLRYS------GSSVGACSHHPALST 89
R+ + +D W F + SS+I CF L+ S +C+ +PA ST
Sbjct: 133 RKTFLSLIDCWKLFVLLILISSLITCFLNLKLSIVPSTKWRPPSSCTMYPANST 186
>Z78012-7|CAB01411.1| 284|Caenorhabditis elegans Hypothetical
protein C52E4.7 protein.
Length = 284
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 187 CAPIFSSVINCFAGLRYSGSSVGACSHHPALSTVY 83
C+P F+SV Y G GA P LST++
Sbjct: 115 CSPDFASVETAHLIKSYIGEKCGAIRIEPELSTLH 149
>U41038-2|AAX88827.1| 635|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform b
protein.
Length = 635
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 128 FSRCLQSPSRLVNCVLCPNTARFVLSKI 45
FS C Q P+R +CV C + + S +
Sbjct: 570 FSTCPQQPTRSYSCVDCKKAEKMLSSDV 597
>U41038-1|AAK29709.2| 683|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform a
protein.
Length = 683
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 128 FSRCLQSPSRLVNCVLCPNTARFVLSKI 45
FS C Q P+R +CV C + + S +
Sbjct: 618 FSTCPQQPTRSYSCVDCKKAEKMLSSDV 645
>AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin
receptor protein.
Length = 635
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 128 FSRCLQSPSRLVNCVLCPNTARFVLSKI 45
FS C Q P+R +CV C + + S +
Sbjct: 570 FSTCPQQPTRSYSCVDCKKAEKMLSSDV 597
>AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin
receptor protein.
Length = 683
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 128 FSRCLQSPSRLVNCVLCPNTARFVLSKI 45
FS C Q P+R +CV C + + S +
Sbjct: 618 FSTCPQQPTRSYSCVDCKKAEKMLSSDV 645
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,402,381
Number of Sequences: 27780
Number of extensions: 171830
Number of successful extensions: 525
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -