Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31214
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   9.6  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 281 NLHCQHTYEREIKRTHNNFI 340
           N+  +H +E +IKR HN F+
Sbjct: 261 NIQLEH-FEMKIKRKHNVFV 279


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 219 YTLLIYGVRLDARPFFLQLSIVL 151
           Y  + Y +RL  RP F   +++L
Sbjct: 200 YPDITYEIRLRRRPMFYVFNLIL 222


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 182 AHFFFSYQLFCRSQVQWLFS-RCLQSPSRLV 93
           A+  F   LFC   VQW      +Q P+ +V
Sbjct: 278 ANLNFILHLFCLLDVQWRIPFNGIQMPNLMV 308


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 47 FYLTQTWQYW 76
          +YLT T+ +W
Sbjct: 20 YYLTSTFDFW 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,929
Number of Sequences: 438
Number of extensions: 2130
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)