Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31214
(347 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63120.1 68414.m07133 rhomboid family protein contains PFAM d... 28 1.5
At3g53780.2 68416.m05942 rhomboid family protein contains PFAM d... 28 2.0
At3g53780.1 68416.m05941 rhomboid family protein contains PFAM d... 28 2.0
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 28 2.0
At1g67220.1 68414.m07651 zinc finger protein-related similar to ... 28 2.0
At4g29560.1 68417.m04215 expressed protein 27 2.6
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ... 27 2.6
At1g12750.1 68414.m01480 rhomboid family protein contains PFAM d... 27 3.4
At1g06330.1 68414.m00669 copper-binding family protein similar t... 27 4.5
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d... 26 6.0
At1g62305.2 68414.m07030 expressed protein contains Pfam profile... 26 7.9
At1g62305.1 68414.m07029 expressed protein contains Pfam profile... 26 7.9
At1g10180.1 68414.m01148 expressed protein 26 7.9
>At1g63120.1 68414.m07133 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 317
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -3
Query: 267 CPYLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQVSG 139
C +LH + L + M +L+ G+RL+ + F+++ ++ +SG
Sbjct: 116 CMWLHAGIIHLLTN-MLSLIFIGIRLEQQFGFIRVGLIYLISG 157
>At3g53780.2 68416.m05942 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 394
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -3
Query: 267 CPYLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQVSG 139
C +LH + L + M TLL G+R++ F+++ ++ +SG
Sbjct: 145 CNWLHGGVVHLLMN-MLTLLFIGIRMEREFGFIRIGLLYLISG 186
>At3g53780.1 68416.m05941 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 270
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -3
Query: 267 CPYLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQVSG 139
C +LH + L + M TLL G+R++ F+++ ++ +SG
Sbjct: 21 CNWLHGGVVHLLMN-MLTLLFIGIRMEREFGFIRIGLLYLISG 62
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 242 RYDGCRYGQTCTFN 283
R GC+YG+TC FN
Sbjct: 169 RTGGCKYGETCRFN 182
>At1g67220.1 68414.m07651 zinc finger protein-related similar to
SP|Q09472 E1A-associated protein p300 {Homo sapiens},
SP|Q92793 CREB-binding protein {Homo sapiens}; contains
Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
PHD-finger, PF02135: TAZ zinc finger
Length = 1357
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -2
Query: 340 DKIIVCPFNLSLIGMLAVQVEGTGLSIPTSIISSQARECHV----YSVDIWSPFRC 185
D +IV P + + V V+ TG++I + ++ +C V VDI P +C
Sbjct: 527 DVVIVEPMKCNKVTKCEVNVDTTGVNIVEPMKCNEVTKCEVNVDTIGVDIVEPMKC 582
>At4g29560.1 68417.m04215 expressed protein
Length = 493
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -1
Query: 170 FSYQLFCRSQVQWLFSRCLQSPSRLVNCVLCPNTARFVLSKILYPEYYLIS 18
F YQ FC S + WL L S V A +L +I P++ IS
Sbjct: 86 FEYQRFCVSDLVWLAREMLGSGGNKVVDFWVQRDAHNLLDRIPKPKFEWIS 136
>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 384
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 248 DGCRYGQTCTFNLHCQHTYERE 313
+GC YG++CTF LH + + RE
Sbjct: 185 EGCPYGESCTF-LHDEASRNRE 205
>At1g12750.1 68414.m01480 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 307
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/41 (24%), Positives = 27/41 (65%)
Frame = -3
Query: 261 YLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQVSG 139
+LH + + + M+ ++I+G+RL+ + F+++ ++ +SG
Sbjct: 105 WLHAGIIHLVMN-MFDVIIFGIRLEQQFGFIRIGLIYLISG 144
>At1g06330.1 68414.m00669 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam heavy-metal-associated domain
PF00403
Length = 159
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 223 HVYSVDIWSPFRCAPIFSSVINCFAGLRYSGSSVGACS 110
H Y + +S +R P+ +S+ + G ++S + ACS
Sbjct: 120 HGYDSNDYSSYRHHPVHASIFSHQTGSKFSDENPNACS 157
>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 389
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 267 CPYLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQVSG 139
C +LH L + M +L+ G+RL+ F+++ ++ +SG
Sbjct: 135 CIWLHAGVFHVLAN-MLSLIFIGIRLEQEFGFVRIGLLYMISG 176
>At1g62305.2 68414.m07030 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 354
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 185 RAHFFFSYQLFCRSQVQWLFSRCLQSPSRLVNCVL-CPNTARFVL 54
R+HFF++ QL +V W S + + L+ L P+ RFVL
Sbjct: 116 RSHFFYNRQLKNSIEVVWGESSMIAAERLLLASALEDPSNQRFVL 160
>At1g62305.1 68414.m07029 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 378
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 185 RAHFFFSYQLFCRSQVQWLFSRCLQSPSRLVNCVL-CPNTARFVL 54
R+HFF++ QL +V W S + + L+ L P+ RFVL
Sbjct: 116 RSHFFYNRQLKNSIEVVWGESSMIAAERLLLASALEDPSNQRFVL 160
>At1g10180.1 68414.m01148 expressed protein
Length = 769
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 98 LVNCVLCPNTARFVLSKILYPEYYLISK 15
L +C+ CPNT LSK+++ + +K
Sbjct: 236 LPSCLTCPNTFPATLSKLVFSNISVATK 263
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,674,188
Number of Sequences: 28952
Number of extensions: 150430
Number of successful extensions: 394
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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