Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31212
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    31   0.14 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   0.97 
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.97 
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    26   5.2  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   9.1  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = -1

Query: 580  YLGM*APSATKPFSSAV*STL*VT-----PSGPTYS*NP--LTLMPSFSVPTFSTLPASS 422
            Y G+ +P  T PFSSA+     +T     PS P YS +P  +   PS+S  + S  P S 
Sbjct: 1531 YKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590

Query: 421  ARILFSVSYK*W*PS-GATSLS 359
            +    S SY    PS  ATS S
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPS 1612


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -1

Query: 559 SATKPFSSAV*STL*VTPSGPTYS*NPLTL-MPSFSVPTFSTLPASSARILFSVSYK*W* 383
           ++T   SS+  S++  +P+G   S    TL M   S P FS   + S+++  SVSY    
Sbjct: 130 TSTVDISSSTSSSVINSPTGTAVSSQISTLSMSPSSTPVFSPSASVSSKVASSVSYVSSE 189

Query: 382 PSGATS 365
           PS ++S
Sbjct: 190 PSDSSS 195


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 360 DNDVAPEGYHYLYETENKI 416
           DND+ PE Y  LYE E+K+
Sbjct: 132 DNDLEPEVYDILYEEESKL 150


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 176 YLGDAYKGSSIVPLPVVKPTIPVPVHTHIRCQQGGHTHIRCQQ 304
           ++  A KGSSI P+ ++   +PV V    +  + G  +I+  +
Sbjct: 173 FIAKAAKGSSIKPIELLPKLLPVYVELIKKLTEAGAEYIQIDE 215


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 290 CGCDHLAGNVCGCELAREW 234
           CGC  +A  V G +L ++W
Sbjct: 198 CGCIAMAARVIGMKLPKDW 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,425
Number of Sequences: 5004
Number of extensions: 36519
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)