Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31212
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 31 0.76
02_01_0428 - 3127098-3129254 31 1.0
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 30 1.8
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642... 29 4.1
05_04_0345 + 20451497-20451740,20452078-20452159,20452837-204528... 28 7.1
01_06_1341 - 36434098-36436080 28 7.1
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 27 9.4
03_02_0407 - 8187956-8188099,8188203-8188371,8188456-8188625,818... 27 9.4
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319... 27 9.4
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 31.1 bits (67), Expect = 0.76
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 202 QHCSPARREAYHSRASSHPHTLPARWS 282
+H + RE H + HP LP+RWS
Sbjct: 712 KHPPDSHREIAHDKQQQHPDVLPSRWS 738
>02_01_0428 - 3127098-3129254
Length = 718
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 267 ASKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGY 386
A ++ PTY++SK P+ + Y+Y I+R + +VA G+
Sbjct: 523 ARVLILPTYMSSKKDLPALKDWKYEYRILRAEVNVARNGF 562
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 456 ENEGIKVKGFYEYVGPDGVTYRVDYTAD 539
E G +++G +VGPDG TYR + AD
Sbjct: 90 EFRGGRIEGQGVFVGPDGATYRGAWAAD 117
>01_07_0160 -
41563109-41563468,41563566-41563985,41564082-41564263,
41564362-41564542,41565066-41565084,41565185-41565445,
41566140-41566253,41566264-41566331,41566890-41567018,
41567141-41567245,41567317-41567456,41567519-41567687,
41567824-41567900,41568133-41568187,41568660-41568705,
41568806-41568894,41568996-41569061,41569360-41569425,
41569817-41569906,41570009-41570026
Length = 884
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 116 PVLLEVPGGAYVGTKEDLSKYLGDAYKGSS 205
P L + PG AY G+K +K G Y GSS
Sbjct: 205 PTLYDHPGSAY-GSKSSATKITGGGYYGSS 233
>05_04_0345 +
20451497-20451740,20452078-20452159,20452837-20452882,
20453669-20454352
Length = 351
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 229 AYHSRASSHP-HTLPARWSHPHTLP 300
A +S P H LP +W+HP T+P
Sbjct: 134 AEQKTSSGEPAHQLPQKWAHPITMP 158
>01_06_1341 - 36434098-36436080
Length = 660
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 232 RLHDGQGNNAGSLVSITKVFAEVLLGSDVGSSRDL 128
+L D + NAG+ V + ++A L S+VG +DL
Sbjct: 482 QLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDL 516
>10_08_0683 - 19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 TYVASKVVTPTYV-ASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHY 392
T +A P Y ASKV P G Y Y+ + V EG++Y
Sbjct: 926 TEIAMGAYQPQYTWASKVSAPRGQIYGYRMSLWAEHIGVVEEGFNY 971
>03_02_0407 -
8187956-8188099,8188203-8188371,8188456-8188625,
8188737-8188915,8189014-8189079,8189171-8189344,
8189593-8189891,8190136-8190236,8190328-8190412,
8190527-8190680,8190781-8190986,8192403-8192647
Length = 663
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 214 PARREAYHSRASSHPHTLPARWSHPHTLP 300
PAR+ ++ + PH P HPH P
Sbjct: 101 PARKGEAAAKGAPSPHPQPVHHHHPHVTP 129
>01_05_0679 +
24230740-24230929,24231330-24231461,24231710-24231977,
24232170-24232388,24233538-24233673,24233899-24234147,
24234783-24235100
Length = 503
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 318 WVGPPCWQRMWV*P 277
W CWQRMWV P
Sbjct: 14 WPTASCWQRMWVHP 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,069
Number of Sequences: 37544
Number of extensions: 277631
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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