Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31211
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    31   0.13 
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    30   0.29 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   2.0  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   6.2  
SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   8.2  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 321 CHSS-I*FKSRAKITRKIMISFSYYCIPHSKY*CVFKHNIFQFWLS--*ANLEKNNKIKL 491
           CH+S I F S  K+++ ++   S   +  S+Y     H + + W+S   A +EK N +  
Sbjct: 573 CHNSLIYFSSGLKMSKSVISCLSRKLVKGSEYLLRTYHEVIRIWISQQEAVIEKRNSVLS 632

Query: 492 YKCC 503
            K C
Sbjct: 633 NKSC 636


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 151 ITVTITRHAKPRVNSNDNRNRQPTGRSSLDGTTLSHNVQISQ-TPKLN 11
           ++  +   A   V  +   N  P GRSSL+ ++LSH +Q SQ +P L+
Sbjct: 161 VSFYLQESAVSEVRFDKPSNNGPLGRSSLNLSSLSHELQTSQDSPSLS 208


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
 Frame = -2

Query: 341  KLN*GMTSYNMGLDNRRCDVYKACRDSPDYPPMSSIVNI*QLYP----LHNIPLSLLFED 174
            K N    + + G D+R      +   SP  PP SS+ N  + +P    LH +P       
Sbjct: 1216 KTNVSANNVSQGTDSRLVTKPTSTFPSPPSPPSSSVWNKREHHPKPFSLHQVPPPESLIH 1275

Query: 173  SYGAGFAHYRHHHT--ARQTEGQ*QRQPEPAADRSELPRWH 57
               + F+   HH T   +   G+  ++ +P   + EL R H
Sbjct: 1276 KSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRSK-ELNRKH 1315


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 148 TVTITRHAKPRVNSNDNRNRQPTGRSSLDGTTLSHNVQIS 29
           TVTITR      +S+ + NR+    SS+     + NVQ++
Sbjct: 94  TVTITRQISQDKSSSFSINREACATSSITSLMDTFNVQLN 133


>SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 86  LPVPVVVAIDPRFGVPCDGD 145
           LP+ +V  I   FG PC GD
Sbjct: 26  LPLTIVYTIWSTFGSPCSGD 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,021
Number of Sequences: 5004
Number of extensions: 60911
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)