Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31211
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0090 - 15940935-15941438                                         31   0.92 
02_04_0279 + 21545317-21546192,21547331-21547667,21547795-21547931     29   4.9  
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015...    28   8.6  

>01_04_0090 - 15940935-15941438
          Length = 167

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = -2

Query: 404 MRNTIIRKRYHNFAGNFCAGFKLN*GMT------SYNMGLDNRRCDVYKACRDSPDYPPM 243
           +R+ +  K+Y+N+A N CA  K+    T      S N+G    RCD  +      +Y P 
Sbjct: 99  VRSWVDEKKYYNYASNSCAAGKVCGHYTQVVWRDSTNVGCARVRCDANRGIFIICNYEPR 158

Query: 242 SSIV 231
            +IV
Sbjct: 159 GNIV 162


>02_04_0279 + 21545317-21546192,21547331-21547667,21547795-21547931
          Length = 449

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 449 PKLKYIMFKNTLIFRMRNTIIRKRYHNFAGNFCAGF 342
           PK KYI F+N   F+ R  ++    +N AG    GF
Sbjct: 385 PKSKYIPFQNNHCFQQRQALVTYLENNRAGITVYGF 420


>10_08_0521 +
           18500105-18500529,18501216-18501284,18501467-18501555,
           18501726-18501838,18502023-18502124,18502576-18502663,
           18502795-18503361,18503766-18504149,18504168-18504384,
           18504466-18504548,18505174-18505256,18505796-18506032,
           18506481-18506658,18506814-18507328,18507740-18507916,
           18508385-18508768,18508885-18509031
          Length = 1285

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 147 PSPSHGTPNRGSIATTTGTGSRQ 79
           PSPS    N+G +A+TTG+   Q
Sbjct: 872 PSPSTNQGNQGGVASTTGSSQMQ 894


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,362,437
Number of Sequences: 37544
Number of extensions: 393212
Number of successful extensions: 998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)