Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31211
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    31   0.71 
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.6  

>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -3

Query: 154  PITVTITRHAKPRVNSND----NRNRQPTGRSSLDGTTLSHNVQISQTPKLNL 8
            PIT T +  AKP  N+N     N N +PT  ++   TT +++   +   K+NL
Sbjct: 3111 PITKTTSTTAKPTTNNNSKPTTNNNSKPTTNNNSKPTTNNNSKPTTNNKKVNL 3163


>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1888

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 153  PLPSPSHGTPNRGSIATTTGTGSRQVGA 70
            P+PSP  GTP+   +   T   SRQ G+
Sbjct: 1416 PIPSPP-GTPDPSQVTRATAASSRQTGS 1442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,425,396
Number of Sequences: 59808
Number of extensions: 472130
Number of successful extensions: 1112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)