Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31211
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    30   1.9  
Z68315-2|CAA92668.1|  535|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z77670-3|CAE17973.1|  201|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/81 (28%), Positives = 34/81 (41%)
 Frame = -2

Query: 269 RDSPDYPPMSSIVNI*QLYPLHNIPLSLLFEDSYGAGFAHYRHHHTARQTEGQ*QRQPEP 90
           R  P   P  +  ++ Q  PL   P     ++ Y    A    H   + +E     QPEP
Sbjct: 488 RPEPRPEPKQNGYHVKQAEPLQAEPP----QNGYRLAAAQALQHEPRQASEPLQNVQPEP 543

Query: 89  AADRSELPRWHYAFPQCPNKS 27
           +   SEL +  YA PQ P ++
Sbjct: 544 SKQASELVQNGYAAPQEPRRA 564


>Z68315-2|CAA92668.1|  535|Caenorhabditis elegans Hypothetical
           protein F28C6.2 protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 74  PTCRLPVPVVVAIDPRFGVPCDGDGN 151
           P   +P P   ++ P FGVP   DGN
Sbjct: 206 PNEHIPYPYAKSLFPTFGVPVSSDGN 231


>Z77670-3|CAE17973.1|  201|Caenorhabditis elegans Hypothetical
           protein W05E10.5 protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 547 RLRSSEIQIGNIVDRSKNTSNQIKYDC 627
           RLR +E++   + DR+ N +N  K DC
Sbjct: 77  RLRMNELKNNRLKDRTNNNNNNNKNDC 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,074,073
Number of Sequences: 27780
Number of extensions: 350401
Number of successful extensions: 954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)