Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31211
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.9  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 222 SNIHYRGHGWIIWT 263
           +N+HY+G   I+WT
Sbjct: 289 NNVHYQGKENILWT 302


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 161 GFAHYRHHHTARQTEGQ*QRQP 96
           G  H+ HHH  +  +    RQP
Sbjct: 348 GPPHHHHHHQTQSLQHLHYRQP 369


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -2

Query: 161 GFAHYRHHHTARQTEGQ*QRQPEP 90
           G  HY HH    + +   + QP P
Sbjct: 277 GLGHYGHHPDPGEVDLPPETQPTP 300


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 143 HHHTARQTEGQ*QRQPE 93
           HHH +   + Q Q QP+
Sbjct: 815 HHHQSTHPQAQAQAQPQ 831


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,358
Number of Sequences: 438
Number of extensions: 4955
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)