Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31211
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34440.1 68417.m04894 protein kinase family protein contains ...    29   3.1  
At2g34720.1 68415.m04264 CCAAT-binding transcription factor (CBF...    29   3.1  
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    28   5.4  

>At4g34440.1 68417.m04894 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 670

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 163 PGSPITVTITRHAKPRVNSNDNRNRQPTGRSSLDGTTLS 47
           P +P   +  R   P   +ND+RNR   G ++ DG+T S
Sbjct: 107 PQTPSNQSPERPTPPSPGANDDRNRTNGGNNNRDGSTPS 145


>At2g34720.1 68415.m04264 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 198

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 248 VDNLDCHDMPYRHHIYGYPGPYYMMSFLNLI*IPRKNYP 364
           +D    +  P  H +Y YP PYY   F     +P   YP
Sbjct: 38  IDTNSVYSEPMAHGLYPYPDPYYRSVFAQQAYLPHP-YP 75


>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 143 HHHTARQTEGQ*QRQPEPAADRSELPRWHYAFP 45
           +HHTA  T    + QP P A     PR H+A P
Sbjct: 393 NHHTAPPTPAPHRSQPHPPAPNPAPPR-HHAIP 424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,891,211
Number of Sequences: 28952
Number of extensions: 313454
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)