Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31210
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   5.9  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 278 FLYFRLGKXIYLCFITKHYWSFMKL 352
           F++F     +  CF+T   WSFMKL
Sbjct: 65  FVHFSKWVELAWCFLTLATWSFMKL 89


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 16  DCHVKWS*MLIFDCVASRSNTYSKRKLSSI 105
           DCH     ++  DC+  R  T++ ++L ++
Sbjct: 154 DCHTGLQPLVDHDCIEDRQKTFASKQLPTL 183


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 224  KV*LIDTLQTRREFLFYY-YYNKDCFRGLIKILL 126
            KV + DT+Q  ++ LF+Y +Y+   F+GL   L+
Sbjct: 942  KVDVYDTIQRSKDELFHYCFYDWYSFKGLTDRLI 975


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,987
Number of Sequences: 5004
Number of extensions: 48416
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)