Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31210
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak ...    29   2.9  
At4g09660.1 68417.m01586 hypothetical protein                          27   8.8  

>At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak
           similarity to long chain polyunsaturated fatty acid
           elongation enzyme [Isochrysis galbana] GI:17226123;
           contains Pfam profile PF01151: GNS1/SUR4 family
          Length = 289

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 556 FYSNRKILLTRFMVMFRNIFTILVETHV-MTNILCNKI 446
           F+ +    LTRF+ MFR IF +L    + ++ + CN +
Sbjct: 130 FFWSYVFYLTRFLHMFRTIFAVLRSRRLAVSQLFCNSV 167


>At4g09660.1 68417.m01586 hypothetical protein
          Length = 664

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 584 KRKTFCMNCYLLRQHCNNE 640
           K K FC+ CYL R    N+
Sbjct: 88  KEKAFCLYCYLFRDQAGNQ 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,001,737
Number of Sequences: 28952
Number of extensions: 211664
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)