Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31208
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 2.9
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 3.8
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 3.8
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 26 3.8
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 5.0
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 5.0
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.0
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 6.6
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 6.6
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 6.6
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 6.6
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 25 6.6
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 6.6
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 6.6
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 6.6
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 8.7
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 8.7
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 8.7
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 25 8.7
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 8.7
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 37 GIDPASKLPQDIIDGKSIPKSKSMYVKSEKSAVKLKIRDGNAVDPASELDEE 192
GI+ +KL + D +SI +++ YV+S + LK D E+DEE
Sbjct: 141 GIEKMAKLYEREHDRRSIAEAEKKYVESAQKITLLKQALKRYHDLHIEIDEE 192
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 395 LSRSFIFSTLLPPIVVPIRPHERNNQYLFSLL 300
LS + LLP I VP+ PHE + +L SLL
Sbjct: 209 LSCKRAYDELLPRIAVPLLPHEYH--HLHSLL 238
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 455 LSFQRFSVFSSYSAWNLSKALSRSFIFSTLLPPIVVPIRP 336
LSF V S S ++ KA + SF++ P + V IRP
Sbjct: 18 LSFLLNCVLVSCSVEDIEKAANDSFLWGPYRPNLYVGIRP 57
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 302 IKRTDTGCSVRGVGSAQRSAA 364
+K+ DTG +V G A RSAA
Sbjct: 640 LKKADTGIAVEGATDAARSAA 660
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 5.0
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +1
Query: 262 QKNSFYKLQILKHNKE----NRYWLFRSWGRIGTTIGGSKVEKMKDLDNALDRFQALYEE 429
Q +FY L ++ KE R W + + +GT+ DLD + F A+ E+
Sbjct: 627 QVQAFYTLPEYEYWKEANNNGRGWKIKYYKGLGTSDHDDMKSYFSDLDRHMKYFHAMQEK 686
Query: 430 KTE 438
E
Sbjct: 687 DAE 689
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -1
Query: 146 ILSLTADFSDLTYMLLLLGIDFPSII----SWGSLE 51
I++ +D S + +LL LG+D PS++ WG ++
Sbjct: 580 IVTHPSDVSQIPSLLLSLGVDPPSVVGHESGWGCVQ 615
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 5.0
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -1
Query: 437 SVFSSYSAWNLSKALSRSFIFSTLLPPIVV 348
++F ++ W++S S +F F L+ P ++
Sbjct: 284 ALFHDFAYWSISGRCSPAFFFQLLIQPFLI 313
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -1
Query: 440 FSV-FSSYSAWNLSKAL--SRSFI-FSTLLPPIVVPIRP 336
FSV S ++AW + + R+ I FST LP I++PI P
Sbjct: 124 FSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVP 162
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -1
Query: 440 FSV-FSSYSAWNLSKAL--SRSFI-FSTLLPPIVVPIRP 336
FSV S ++AW + + R+ I FST LP I++PI P
Sbjct: 124 FSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVP 162
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 170 RRRNWTRSATCTRTATKQRTRSCSRSLMLS 259
R RNW S + A +R+ SC +S ++S
Sbjct: 194 RIRNWLSSLNSWQLAAFERSVSCCKSFIVS 223
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 146 ILSLTADFSDLTYMLLLLGIDFPSIISWGS 57
ILS A + + ++GIDF S+IS GS
Sbjct: 871 ILSACAIVTKIREQARIIGIDFMSVISRGS 900
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 6.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 349 TTIGGSKVEKMKDLDNALDRFQALYEEKTENRWKD 453
TT+ G +V MKD + LDR L +++TE R+ +
Sbjct: 253 TTLKG-EVTAMKDSISQLDRKIDLLDQRTEERFNN 286
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 301 NKENRYWLFRSWGRIGTTIGGSKVE-KMKDLDNALDRFQA 417
++E+R + +RSW R GG+ + +++ +D D A
Sbjct: 272 HEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSA 311
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -1
Query: 440 FSV-FSSYSAWNLSKAL--SRSFI-FSTLLPPIVVPIRP 336
FSV S ++AW + + R+ I FST LP I++PI P
Sbjct: 124 FSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVP 162
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -1
Query: 440 FSV-FSSYSAWNLSKAL--SRSFI-FSTLLPPIVVPIRP 336
FSV S ++AW + + R+ I FST LP I++PI P
Sbjct: 124 FSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVP 162
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 24.6 bits (51), Expect = 8.7
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Frame = +1
Query: 121 EKSAVKLKIRDGNAVDPASELDEECHVYTDR-YKTTYSVVLSLAD------VVAQK--NS 273
E K K R G ++ D E +Y D +T Y+ +++ A+ + K +
Sbjct: 174 ESEVNKRKTRLGARLEQVMR-DVELEIYKDSPLETLYNQIINYAETDEIRRLTESKLLHM 232
Query: 274 FYKLQILKHNKENRYWLFRSWGRI 345
+ KL IL KE +W R W I
Sbjct: 233 YNKLLILSEIKEKSHWRERIWDLI 256
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 302 IKRTDTGCSVRGVGSAQRSAA 364
+K+ D G +V G A RSAA
Sbjct: 728 LKKADAGIAVEGASDAARSAA 748
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 383 FIFSTLLPPIVVPIRPHERNN 321
F+ + PP VP+RPH+ N
Sbjct: 151 FVTPRISPPPDVPLRPHKPKN 171
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 176 RNWTRSATCTRTATKQRTRSCSRSLMLSLKRT 271
+NW R TR ++ SL+LSL T
Sbjct: 352 QNWARLTVATRAEVERAKAQLRASLLLSLDST 383
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 24.6 bits (51), Expect = 8.7
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
Frame = +1
Query: 73 IDGKSIPKSKSMYVKSEKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTTYSVVLSLAD 252
I+ S+P +K++ S + +K + P+S +E V DR K + + +
Sbjct: 835 INENSVPFNKNLLPHSLEFILKCSKVKSYDISPSSINSKEAFVCLDRSKESKPIESCFSL 894
Query: 253 VVAQKNSFYKLQILKHNKENRYWLFRSWGRIGTT-IGGSKVEKMKDLDNA 399
+ S Y K+N R W IGG+ E + DL A
Sbjct: 895 SI---QSVYMQSQFKYNNSIRAGETAPWKLANKQFIGGAITENVSDLYTA 941
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,385
Number of Sequences: 5004
Number of extensions: 36636
Number of successful extensions: 183
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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