Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31208
(509 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0) 91 6e-19
SB_30375| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 3e-08
SB_34589| Best HMM Match : WGR (HMM E-Value=0.37) 41 5e-04
SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_47750| Best HMM Match : Metallothio (HMM E-Value=9) 31 0.73
SB_24326| Best HMM Match : DENN (HMM E-Value=0) 31 0.73
SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011) 29 1.7
SB_46937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044) 29 2.9
SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_10373| Best HMM Match : PKD (HMM E-Value=5) 28 3.9
SB_8284| Best HMM Match : C1_3 (HMM E-Value=0.38) 28 3.9
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_23356| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10) 27 9.0
>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
Length = 834
Score = 90.6 bits (215), Expect = 6e-19
Identities = 56/147 (38%), Positives = 81/147 (55%), Gaps = 19/147 (12%)
Frame = +1
Query: 16 EYNIADWGIDPASKLPQDIIDG-----KSIPKSKSMYVKSEKSAVKLKIRDGNAVDPASE 180
++++ WG A DI+DG + SK S+ VKL ++ G AVDPASE
Sbjct: 349 KHSLVSWGKIKAL----DIVDGPLPLRRKASDSKYELGASQPKKVKLSVKGGAAVDPASE 404
Query: 181 LDEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILKHNKENRY-------------- 318
++++CHV + YS L + D+ NS+YKLQ+LK +K +R
Sbjct: 405 MEDDCHVLEVK-GVVYSATLGMVDISRGTNSYYKLQVLKKDKSSRTGAKNDIVRFTHDRC 463
Query: 319 WLFRSWGRIGTTIGGSKVEKMKDLDNA 399
+LFRSWGR+GTTIGGSK+E +D+ A
Sbjct: 464 YLFRSWGRVGTTIGGSKLEAHEDVVKA 490
>SB_30375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +1
Query: 268 NSFYKLQILKHNKENRYWLFRSWGRIGTTIGGSKVEKMKDLDNALDRFQALYEEKTENRW 447
N+FYK+Q++ +N + L WGRIG G ++ D A D F+ ++ KT N W
Sbjct: 105 NNFYKMQVIFEKGKNLWVLLTRWGRIGDR-GQHQLTPFSDAKAATDEFKKIFRSKTGNLW 163
Query: 448 KDRNNFVKIAGRY 486
++ +FVK +Y
Sbjct: 164 DEKGSFVKHPKKY 176
>SB_34589| Best HMM Match : WGR (HMM E-Value=0.37)
Length = 113
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 385 DLDNALDRFQALYEEKTENRWKDRNNFVKIAGRYFPLEIDY 507
+LD A F+ + +KT+N W+DR +F K+ G+Y L +DY
Sbjct: 15 NLDAAKRTFEKKFSDKTKNDWEDRASFTKVQGKYDLLIMDY 55
>SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/32 (34%), Positives = 24/32 (75%)
Frame = +1
Query: 379 MKDLDNALDRFQALYEEKTENRWKDRNNFVKI 474
+KD+D LD+F +L++ + + W++++N+V I
Sbjct: 318 IKDIDKLLDKFMSLHKPEDISAWEEKHNYVWI 349
>SB_47750| Best HMM Match : Metallothio (HMM E-Value=9)
Length = 191
Score = 30.7 bits (66), Expect = 0.73
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +2
Query: 167 TRRRNWTRSATCTRTATKQRTRSCSRSLMLSLKRTLSTNCRS*NIIKRTDTGCSVRGVGS 346
T + N S +C R+ + ++SC+RSL + ++ + + K + +R S
Sbjct: 110 TNQMNSAASKSCNRSLGIRASKSCNRSLGIRASKSCNRSL-GIRASKSCNRSLGIRASKS 168
Query: 347 AQRSAAVKSRR*KIS 391
RS +++R +IS
Sbjct: 169 CNRSLGIRARNSRIS 183
>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
Length = 1281
Score = 30.7 bits (66), Expect = 0.73
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +2
Query: 152 TATLWTRRRNWTRSATCTRT-----ATKQRTRSCSRSLMLSLK 265
T L ++++NWTR TRT TKQR R C + +++L+
Sbjct: 1119 TMMLNSKKKNWTRDPRLTRTLSADHETKQRIRKCVYTQIVALR 1161
>SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 361 GSKVEKMKDLDNALDRFQALYEEKTENRWKDRNN 462
G K +K+ D DNA +++Y E+ + K +NN
Sbjct: 272 GGKKKKLLDSDNATAMIESIYNEEMREQEKRKNN 305
>SB_46937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/101 (24%), Positives = 44/101 (43%)
Frame = +1
Query: 115 KSEKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQIL 294
+ E+ A K++ + + E + D YK S V S+ VVAQ+ KLQ
Sbjct: 438 EEERMAHKVESLESEKSQLQGSVQENRSILED-YKKQVSPV-SVEQVVAQEKDLSKLQTE 495
Query: 295 KHNKENRYWLFRSWGRIGTTIGGSKVEKMKDLDNALDRFQA 417
+++ FR+ T E++KD ++ +D +A
Sbjct: 496 LSRQKSLVEEFRNQANCSTNQVEMLRERLKDYEDRIDELKA 536
>SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)
Length = 537
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 146 ILSLTADFSDLTYMLLLLGIDFPSIIS 66
+LS D+SD + +LLLG+DF I +
Sbjct: 164 VLSTGVDYSDRHFHVLLLGLDFSDIFT 190
>SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 46 PASKLPQDIIDGKSIPKSKSMYVKSEKSAVKLKIRDGNAVDPASELDEECHVY 204
P S + + +G ++ + S + A K I++G+ +DP ++LD+ +Y
Sbjct: 52 PRSLILDQVTNGIAVRMAVMSMAMSGQMAEKNLIKNGHVIDPKNQLDQVTDLY 104
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 164 WTRRRNWTRSATCTRTATKQRTRSCSRSLMLSLKRTLS 277
++R+R + R T +R T R R+ SR SL+RT S
Sbjct: 1255 FSRKRTFFRKRTFSRKRTFFRKRTFSRKQTFSLRRTFS 1292
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 55 KLPQDIIDGKSIPKSKSMYVKSEKSAVKLKIRDGNAVDPASELDEECHVY-TDRYKTTYS 231
KL D+I + +P VK+ K + + I+D V + + V TDR +T
Sbjct: 829 KLTDDLIIVQDLPYDSVEKVKAAKDKLTISIKDSKTVISTDRVRTDLRVISTDRVRTDLR 888
Query: 232 VV 237
V+
Sbjct: 889 VI 890
>SB_10373| Best HMM Match : PKD (HMM E-Value=5)
Length = 230
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 185 TRSATCTRTATKQRTRSCSRSLMLSLKRTLS 277
T + T TRT T RT S + +L LSL TLS
Sbjct: 53 TLTLTLTRTLTLTRTLSLTLTLTLSLSLTLS 83
>SB_8284| Best HMM Match : C1_3 (HMM E-Value=0.38)
Length = 523
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 230 RSCSRSLMLS--LKRTLSTNCRS*NIIKR-TDTGCSVRGV 340
+ C+ L S +KR + T CR ++IK+ TGC V V
Sbjct: 473 KGCTNGLSCSSVIKRVVQTGCRVDSVIKKVVQTGCRVDSV 512
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +1
Query: 25 IADWGIDPASKLPQDIIDGKSIPKSKSMYVKSEKS----AVKLKIRDGNAVDPASELDEE 192
+A GID A ++P+ + + +SKS+ +S S + NAV P +LD
Sbjct: 2706 VAKPGIDVAKEIPEQMNGLSEVKESKSVSAESMDSFGNASAARTSSPFNAVSPQRQLDSS 2765
Query: 193 CHVYTDRYKTTYSVVL 240
+ R + + VL
Sbjct: 2766 DKASSTRTSSPFKAVL 2781
>SB_23356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 27.1 bits (57), Expect = 9.0
Identities = 24/90 (26%), Positives = 37/90 (41%)
Frame = +1
Query: 217 KTTYSVVLSLADVVAQKNSFYKLQILKHNKENRYWLFRSWGRIGTTIGGSKVEKMKDLDN 396
+T +S VL + A + S YK + H N + +G ++++ +DL
Sbjct: 27 RTRHSNVLCMRS--ADERSLYKGKESTHMLNNISYAICHYGDYRCRKDQAEIKHPEDLQG 84
Query: 397 ALDRFQALYEEKTENRWKDRNNFVKIAGRY 486
A Q +EK N K VKI RY
Sbjct: 85 ASKEQQKHPKEKLLNNEKQLRRLVKIFHRY 114
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 149 ATATLWTRRRNWTRSATCTRTATKQRTRSCSRS 247
A + W+ NWT + + + RTRSC ++
Sbjct: 896 ACPSTWSSWSNWTSCSVSCGSGVQVRTRSCEKA 928
>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
Length = 228
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 370 VEKMKDLDNALDRFQALYEEKTENRWKDRNNFVKIA 477
+EKMKDL++ D+ + EE +K R K+A
Sbjct: 189 IEKMKDLESKRDQVEIPNEESITAYYKIRQQLKKLA 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.134 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,469,762
Number of Sequences: 59808
Number of extensions: 254271
Number of successful extensions: 977
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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