Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31207
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0174 - 15424277-15424618,15425125-15425633,15426004-154260...    29   0.90 
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572...    29   1.2  
03_05_0427 + 24142474-24142502,24143679-24143739,24146678-241470...    27   3.6  
03_05_0258 - 22442527-22443927                                         27   3.6  
08_02_0002 + 11173365-11173512,11173528-11178470                       27   6.3  
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116...    26   8.4  

>10_08_0174 -
           15424277-15424618,15425125-15425633,15426004-15426047,
           15427097-15427100,15427646-15427672,15427885-15428371
          Length = 470

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 354 PLLKLQKSSPDTPQPDTVRDTLAYXPDRSRYN 259
           PL++ Q  SP TP P + R T A  PDR  Y+
Sbjct: 419 PLVQTQDQSPSTPPPYS-RATRAVPPDRFTYS 449


>04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,
            5724297-5724558,5724662-5724960,5725040-5725453,
            5725533-5725899,5726002-5726146,5726562-5727558
          Length = 1015

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 354  PLLKLQKSSPDTPQPDTVRDTLAYXPDRSRYN 259
            P +  Q+ SP TP PD  R T A  PDR  Y+
Sbjct: 964  PPVHTQEQSPSTPLPDP-RATRAVPPDRFTYS 994


>03_05_0427 +
           24142474-24142502,24143679-24143739,24146678-24147022,
           24147651-24147929,24149063-24149230
          Length = 293

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 372 LKWIRIPLLKLQKSSPDTPQPDTVRDTLAYXPD 274
           L WIR  +L LQ++ P TP P    D     PD
Sbjct: 99  LGWIRQAVLLLQRARPSTPPPKQA-DAKGTRPD 130


>03_05_0258 - 22442527-22443927
          Length = 466

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 159 LPEIRNLWH-AHKLNKYQRIKGIFCFFFSIFN 67
           LPE+ N WH   ++N YQ+ + +     S+FN
Sbjct: 275 LPEVANYWHQVIRINDYQKSRFVNRVVSSMFN 306


>08_02_0002 + 11173365-11173512,11173528-11178470
          Length = 1696

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 153  EIRNLWHAHKLNKYQRIKGIFCFFFSIFNLETNEE*PSKTS 31
            E+ NL    ++N+Y+  K I  + FS++ L  + E P KTS
Sbjct: 1123 EVPNLEPEERINEYELSKNIDNYSFSLY-LPKSIELPGKTS 1162


>02_05_0030 +
           25209067-25209130,25209231-25209400,25210482-25211668,
           25211695-25212011,25212669-25213374,25214248-25215448
          Length = 1214

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 180 HRYTRPRCPMHLKCFGL*ADLKFETGR-YIAIGPV 281
           H   R  CP  L  +GL A +K  TGR Y  +G V
Sbjct: 548 HCRARLHCPYGLMAYGLLAQMKKTTGRVYGGLGGV 582


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,249,668
Number of Sequences: 37544
Number of extensions: 131979
Number of successful extensions: 352
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)