Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31207
         (374 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 28   2.8  
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 27   5.0  

>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = -3

Query: 315 QPDTVRDTLA-YXPDRSRYN----DLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPE 151
           QP   R+ L    PDR  Y+    D+FRT + +K    S     +    D    +TSL +
Sbjct: 222 QPKDAREQLTTQLPDRVNYDAYDADIFRTTSNVKPLTDSILRQGSHSMPDVIPKVTSLTD 281

Query: 150 IRNL 139
           I  L
Sbjct: 282 IERL 285


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -3

Query: 297 DTLAYXPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNLWHAHKLN 118
           + LA+  + +R         PL + NT+DA    V Y      LT +P  RNL     L+
Sbjct: 662 EQLAFDREAARVFSRRAENGPLPSVNTNDADVIDVLYRVQGMKLTDVPRERNLIGGSALS 721

Query: 117 KY 112
            Y
Sbjct: 722 NY 723


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 227 ALSGFKVRNRSLYRDRSGXYANVSRTVSGCGVSGE 331
           +L+GF    R +  D+S    N+S     CG+ G+
Sbjct: 265 SLAGFIEERRDIQFDQSAKLPNISSPAGRCGMEGD 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,920,724
Number of Sequences: 59808
Number of extensions: 168786
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)