Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31207
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087081-5|AAK66038.1|  273|Caenorhabditis elegans Hypothetical ...    28   2.5  
AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical ...    26   7.6  
AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related p...    26   7.6  

>AC087081-5|AAK66038.1|  273|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.15 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 276 PVCMLTCHALCQVVECRVNFSGVLIGE 356
           P+ MLTC  +C+ +   ++  G+L G+
Sbjct: 63  PMAMLTCRKVCRTLRSTIDRLGILYGD 89


>AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical
           protein H22D07.1 protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 195 VGYSDATTTLTSLPEIRNLWHAHKLNKYQRIKGIFCFFFSIF 70
           + YS+   TL  L E   L  A ++++  RIK   C +  +F
Sbjct: 1   MSYSNENLTLEELQEAHALKEAEEISEILRIKIEVCIYVIVF 42


>AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related
           protein 1 protein.
          Length = 455

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
 Frame = -3

Query: 345 KLQKSSPDTPQPDTVRDTLAYXPDRSRYNDLFRTLNPL------KARNTSD---ASDSAV 193
           K+QK   D+PQP    D+ +  P  S+ +     + PL      + R + D   ASD+ +
Sbjct: 342 KVQKQKNDSPQPC---DSSSTSPRSSQSSIKIARVVPLTGGQRKRGRQSIDEQLASDNGL 398

Query: 192 GYSDATTTLTSLPEIRNLWHAHKLNKYQ 109
             S    +  SL E++ +     LN+YQ
Sbjct: 399 PVSAFQISEMSLSEVKQVLKDESLNEYQ 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,293,421
Number of Sequences: 27780
Number of extensions: 122002
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)