Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31207
         (374 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)...    29   1.3  
At5g18960.1 68418.m02252 far-red impaired responsive protein, pu...    26   7.1  
At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative v...    26   7.1  
At5g37660.1 68418.m04535 receptor-like protein kinase-related si...    26   9.4  
At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,...    26   9.4  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    26   9.4  

>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
           identical to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 850

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 203 SDASEVFRALSGFKVRNRSLYRDRSGXYANVSRTVSGCG 319
           S+ S V   + GFK RN  ++  R G    V +T+  CG
Sbjct: 310 SNTSPVCNCIKGFKPRNPQVWGLRDGSDGCVRKTLLSCG 348


>At5g18960.1 68418.m02252 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 788

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 155 GNDVKVVVASLYPTALSDASEVFRALS---GFKVRNRSLYRDRSGXYANVSRTV 307
           G+ V+  V   + TA  +A E + A +   GFKVR   LYR R+    +  R V
Sbjct: 38  GSGVEPYVGLEFDTA-EEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFV 90


>At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative very
           strong similarity to SP|Q96558 UDP-glucose
           6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
           (UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
           profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
           family NAD binding domain, PF00984:
           UDP-glucose/GDP-mannose dehydrogenase family central
           domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
           family UDP binding domain
          Length = 480

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 159 LPEIRNLW-HAHKLNKYQRIKGIFCFFFSIFNLETNEE 49
           LPE+   W    K+N YQ+ + +     S+FN  +N++
Sbjct: 289 LPEVAEYWKQVIKINDYQKTRFVNRIVSSMFNTVSNKK 326


>At5g37660.1 68418.m04535 receptor-like protein kinase-related
           similar to receptor-like protein kinase 4 (GI:13506745)
           {Arabidopsis thaliana}; embryonic abundant protein
           EMB24, white spruce, PIR:T09251; contains Pfam PF01657:
           Domain of unknown function
          Length = 288

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 270 IGPVCMLTCHALCQVVECRVNFSGV 344
           +GP+C  TC    Q+  C + +  +
Sbjct: 113 VGPLCPFTCGGALQLAGCYIKYDNI 137


>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q60809 CCR4-NOT
           transcription complex, subunit 7 (CCR4-associated factor
           1, (CAF1) [Mus musculus]
          Length = 239

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 324 DTPQPDTVRDTLAYXPDRSRYNDL 253
           DT  P T+R+T  +  D  RY D+
Sbjct: 17  DTEFPSTLRETTQHATDEERYMDM 40


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 201 SAVGYSDATTTLTSLPEIRNLWHAHKLNK 115
           S + +S   T+L+ +  I+N+ + +KLNK
Sbjct: 348 SVIEFSQLETSLSDVDAIKNIKNTYKLNK 376


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,865,206
Number of Sequences: 28952
Number of extensions: 111570
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)