Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31206
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.16
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 0.16
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 29 0.48
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 29 0.84
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 1.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 3.4
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 27 3.4
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 4.5
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 4.5
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 26 5.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.9
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 5.9
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 5.9
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 26 5.9
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 25 7.9
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 7.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 7.9
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.1 bits (67), Expect = 0.16
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKR--LIEKQAKRK 421
KQ+ E D E + R+ + R + ++++ E + R++ KEE+E +R L+EK+++ K
Sbjct: 677 KQQQEADREKMAREQRLREEEEKRILEE-RKRREKLDKEEEERRRRELLEKESEEK 731
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 293 KRQDQKRSDLDEQLKEYINEW--RKQRAKEEDELKRLIEKQAKRK 421
++Q ++ L +Q +E E R+QR +EE+E KR++E++ +R+
Sbjct: 666 QKQKEREKKLKKQQQEADREKMAREQRLREEEE-KRILEERKRRE 709
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 31.1 bits (67), Expect = 0.16
Identities = 23/100 (23%), Positives = 42/100 (42%)
Frame = +2
Query: 299 QDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXXXXXXXXXXXXXXX 478
++Q + + +E+ K E K+ A E++ KR E+ AKR+
Sbjct: 566 EEQAKREAEEKAKREAEEKAKREA--EEKAKREAEENAKREAEEKAKREAEEKAKREAEE 623
Query: 479 XXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASK 598
+ EEK +R E + KR+A +A ++A +
Sbjct: 624 KAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEE 663
Score = 29.1 bits (62), Expect = 0.64
Identities = 22/100 (22%), Positives = 42/100 (42%)
Frame = +2
Query: 299 QDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXXXXXXXXXXXXXXX 478
+++ + + +E+ K E K+ A E++ KR E++AKR+
Sbjct: 582 EEKAKREAEEKAKREAEENAKREA--EEKAKREAEEKAKREAEEKAKREAEEKAKREAEE 639
Query: 479 XXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASK 598
+ EEK +R E KR+A +A ++A +
Sbjct: 640 KAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEE 679
Score = 27.5 bits (58), Expect = 1.9
Identities = 30/142 (21%), Positives = 55/142 (38%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXX 439
K+E E + ++ KR + +E+ K E K+ A E++ KR E++AKR+
Sbjct: 586 KREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREA--EEKAKREAEEKAKREAEEKAK 642
Query: 440 XXXXXXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPS 619
+ EEK +R E KR+A + +K ++ +
Sbjct: 643 REAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAE-EKVKRETEENAKRKA 701
Query: 620 KRRAKTSV*AMPSWSATRPRSS 685
+ K P ++ P +S
Sbjct: 702 EEEGKREADKNPEIKSSAPLAS 723
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 138 SLGTGSWTGSTATLECGAAATLVPNSCSPG 49
++GTG W GS+ +L G AA+++ + C G
Sbjct: 96 AIGTGVWVGSSKSLYRGGAASVLIDYCIVG 125
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 28.7 bits (61), Expect = 0.84
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 518 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPS--KRRAKTSV*AMPSWSA 667
+ +R R E+ + A + KDAS GP PS +R++TSV PS S+
Sbjct: 43 VHHERNRSEDILRTGGATSETTKDASAAGPVTPSFAMKRSQTSV--QPSMSS 92
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQ---KRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVS 427
KQE + +++ D+ K + +E L++ + + + DE+K LIEKQ +K S
Sbjct: 122 KQEHLDIKKRLEKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKES 180
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 138 SLGTGSWTGSTATLECGAAATLV 70
++GTG W GS TL G AA+++
Sbjct: 96 AIGTGVWVGSKNTLREGGAASVL 118
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 287 FIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDE 385
FIKR DQ L+E+L + E + KE+D+
Sbjct: 1087 FIKRVDQLEEALNEKLARLVGEQMVEGDKEKDK 1119
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 287 FIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDE 385
FIKR DQ L+E+L + E + KE+D+
Sbjct: 1087 FIKRVDQLEEALNEKLARLVGEQMVEGDKEKDK 1119
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 367 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 251
P+FA + L LF+Q+ P + + FW S+ L+ +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +2
Query: 521 EEKRQRLEEAEKKRQAMLQA 580
EEKR+++EE++K + +LQA
Sbjct: 138 EEKRRKIEESDKWHRVLLQA 157
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 263 QEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEE 379
Q G + E D+ RSD +E E +N+ +KQ ++E+
Sbjct: 225 QSGNDEEEIFSWGDE-RSDEEESDNEQVNDEKKQSSEED 262
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 185 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNV-EPRRPSCRIPAARGTTSI 36
CW I G S L+ AL+L PA+ NV S +P G SI
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLSSVEISSGLPVIYGMASI 342
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 284 EFIKRQDQKRSDLDEQLKEYINEWRKQRAK 373
E +KR+DQK+ D+ E L+EY + +R K
Sbjct: 272 ELLKRRDQKQQDV-EALQEYSAKLSLERDK 300
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 15 SPRWRPLYTSGPPGCRNSARGSPRLHIP 98
SPR P+ SG P N+A G P L +P
Sbjct: 1589 SPRMGPVNNSGSPLAMNAA-GQPSLAVP 1615
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 293 KRQDQKRSDLDEQL-KEYINEWRKQRAKEEDELKRLIEK 406
KR+ Q+ D L KEY + +++ K+ D+L+ L+ K
Sbjct: 326 KREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSK 364
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 299 QDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQA 412
+ Q S + +L I + +K ++ E +LKRL EKQA
Sbjct: 51 EGQALSKNELKLNNTIKQLKKSLSEAETKLKRLDEKQA 88
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 53 GLQEFGTRVAAAPHSNVAVLPVQEPVPSD*VTDFYPCDTQ*TTNMSD 193
G +EF T +A+A S + V EP T Y D + TT +++
Sbjct: 192 GSEEFTTTLASASGSISGTVEVIEPTAGTVTTTIYSGDQEYTTILAE 238
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 290 IKRQDQKRSDLDEQLKEYINEWRKQRAKEED---ELKRL 397
I RQ Q L ++ K+ + E RK+RAKEE+ E KRL
Sbjct: 8 IVRQQQYMKALHQKNKDKL-ERRKERAKEEEKDPEKKRL 45
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 350 EWRKQRAKEEDELKRLIEKQAKRK 421
E + Q+ ++E+EL+ L E++AK+K
Sbjct: 103 ELKLQKKEKEEELRNLEEEKAKKK 126
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 254 APKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEK 406
AP + E +P+ + L E+ K + E RKQR +D + IEK
Sbjct: 794 APAPQAEPEPKI------DETSLTEEQKIQLEEARKQRKAADDAARAAIEK 838
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,313
Number of Sequences: 5004
Number of extensions: 35086
Number of successful extensions: 206
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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