Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31206
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 45 4e-05
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 45 4e-05
U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 44 1e-04
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 44 1e-04
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 44 1e-04
AF045641-4|AAO91715.1| 332|Caenorhabditis elegans Hypothetical ... 32 0.45
AF045641-3|AAO91716.1| 368|Caenorhabditis elegans Hypothetical ... 32 0.45
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 32 0.45
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 31 0.59
AF106583-6|AAD03137.1| 233|Caenorhabditis elegans Hypothetical ... 31 0.59
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical pr... 31 1.0
U88172-4|AAB42259.1| 224|Caenorhabditis elegans Hypothetical pr... 31 1.0
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 31 1.0
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 29 2.4
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 29 2.4
Z22173-1|CAA80125.1| 398|Caenorhabditis elegans Hypothetical pr... 29 2.4
U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical pr... 29 2.4
L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical pr... 29 2.4
L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical pr... 29 2.4
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 29 2.4
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81080-4|CAB03087.2| 224|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical pr... 29 3.2
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 29 3.2
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 29 3.2
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical pr... 25 4.9
Z81583-4|CAB04669.1| 323|Caenorhabditis elegans Hypothetical pr... 28 5.5
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 5.5
U40799-1|AAA81479.1| 250|Caenorhabditis elegans Hypothetical pr... 28 5.5
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 5.5
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 28 5.5
AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical ... 28 5.5
AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical ... 28 5.5
Z78016-4|CAC42335.1| 359|Caenorhabditis elegans Hypothetical pr... 28 7.3
U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical pr... 28 7.3
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 28 7.3
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 28 7.3
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 28 7.3
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 28 7.3
Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 27 9.6
Z75710-1|CAB00023.1| 327|Caenorhabditis elegans Hypothetical pr... 27 9.6
U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 27 9.6
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 27 9.6
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical... 27 9.6
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 45.2 bits (102), Expect = 4e-05
Identities = 31/123 (25%), Positives = 57/123 (46%)
Frame = +2
Query: 272 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXXXXXX 451
EG+ + + + +D +L++Y R +R KEE+EL++L EKQA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 452 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPSKRRA 631
EEK+++ EE KK Q M+ + G NF +++
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 632 KTS 640
+++
Sbjct: 165 ESA 167
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 45.2 bits (102), Expect = 4e-05
Identities = 31/123 (25%), Positives = 57/123 (46%)
Frame = +2
Query: 272 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXXXXXX 451
EG+ + + + +D +L++Y R +R KEE+EL++L EKQA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 452 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPSKRRA 631
EEK+++ EE KK Q M+ + G NF +++
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 632 KTS 640
+++
Sbjct: 165 ESA 167
>U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein
3, isoform c protein.
Length = 279
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/120 (25%), Positives = 49/120 (40%)
Frame = +2
Query: 272 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXXXXXX 451
EG+ + + + +L++Y R +R KEE+ELK+L EKQ KRK+
Sbjct: 52 EGERAMAAAKRRHEEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQEEKEM 111
Query: 452 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPSKRRA 631
+++R R EE KK Q L + + G NF ++A
Sbjct: 112 EERRRAADDRRRQEEEERKAKVDQDRRNREEEKNKKNQ--LSGFQTGGQGGRNFTVAKKA 169
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/120 (25%), Positives = 49/120 (40%)
Frame = +2
Query: 272 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXXXXXX 451
EG+ + + + +L++Y R +R KEE+ELK+L EKQ KRK+
Sbjct: 886 EGERAMAAAKRRHEEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQEEKEM 945
Query: 452 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPSKRRA 631
+++R R EE KK Q L + + G NF ++A
Sbjct: 946 EERRRAADDRRRQEEEERKAKVDQDRRNREEEKNKKNQ--LSGFQTGGQGGRNFTVAKKA 1003
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/120 (25%), Positives = 49/120 (40%)
Frame = +2
Query: 272 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXXXXXX 451
EG+ + + + +L++Y R +R KEE+ELK+L EKQ KRK+
Sbjct: 52 EGERAMAAAKRRHEEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQEEKEM 111
Query: 452 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPSKRRA 631
+++R R EE KK Q L + + G NF ++A
Sbjct: 112 EERRRAADDRRRQEEEERKAKVDQDRRNREEEKNKKNQ--LSGFQTGGQGGRNFTVAKKA 169
>AF045641-4|AAO91715.1| 332|Caenorhabditis elegans Hypothetical
protein F53H1.4b protein.
Length = 332
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Frame = +2
Query: 248 TPAPKQEGEGDPEFI--KRQDQKRSDLDEQLKEYINEWRKQRA-----KEEDELKRLIEK 406
TP G P + +R +K+ + DE+ KE + + +K++ KEE++ K+L EK
Sbjct: 181 TPRGAPRASGGPVILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEK 240
Query: 407 QAKRK 421
+ K K
Sbjct: 241 EEKLK 245
>AF045641-3|AAO91716.1| 368|Caenorhabditis elegans Hypothetical
protein F53H1.4c protein.
Length = 368
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Frame = +2
Query: 248 TPAPKQEGEGDPEFI--KRQDQKRSDLDEQLKEYINEWRKQRA-----KEEDELKRLIEK 406
TP G P + +R +K+ + DE+ KE + + +K++ KEE++ K+L EK
Sbjct: 217 TPRGAPRASGGPVILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEK 276
Query: 407 QAKRK 421
+ K K
Sbjct: 277 EEKLK 281
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Frame = +2
Query: 248 TPAPKQEGEGDPEFI--KRQDQKRSDLDEQLKEYINEWRKQRA-----KEEDELKRLIEK 406
TP G P + +R +K+ + DE+ KE + + +K++ KEE++ K+L EK
Sbjct: 217 TPRGAPRASGGPVILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEK 276
Query: 407 QAKRK 421
+ K K
Sbjct: 277 EEKLK 281
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 281 PEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
P F + DQK L++ + + + E +RA +E +RL+E++ +RK
Sbjct: 643 PHFNQSNDQKNLGLEKSVTDRVRE--MERAMRGEERERLLEEEKRRK 687
>AF106583-6|AAD03137.1| 233|Caenorhabditis elegans Hypothetical
protein F23C8.9 protein.
Length = 233
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 293 KRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQA 412
++ DQK +++DE ++E ++R +EE E K ++ A
Sbjct: 182 EKSDQKTAEIDENVEEEYRMMEEERLREEQEAKEAADEDA 221
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/46 (28%), Positives = 31/46 (67%)
Frame = +2
Query: 290 IKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVS 427
I +++++ +L+E+ K+ E +R EE++ K+ +E++ KRK++
Sbjct: 571 IYEEEKRKKELEEERKKK-EELEIKRKAEEEKKKKALEEEKKRKIA 615
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDL--DEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
KQ + E K+Q+++ + L +E+LK Y E RK+ +EE + K E + KRK
Sbjct: 543 KQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKE--ELEIKRK 596
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/91 (25%), Positives = 35/91 (38%)
Frame = +2
Query: 320 LDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXXXXXXXXXXXXXXXXXXXXXX 499
++E K+ KQR +EE +K EKQ K
Sbjct: 515 IEESKKKQEKLELKQREEEEARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEE 574
Query: 500 XXXXXDIEEKRQRLEEAEKKRQAMLQAMKDA 592
++EE+R++ EE E KR+A + K A
Sbjct: 575 EKRKKELEEERKKKEELEIKRKAEEEKKKKA 605
>Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical
protein ZK1098.1 protein.
Length = 724
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 335 KEYINEWRKQRAKEEDELKRLIEKQAK 415
K+ N W+ QR KEE + KRL K++K
Sbjct: 273 KQLFNAWKVQRGKEERDEKRLAIKKSK 299
>U88172-4|AAB42259.1| 224|Caenorhabditis elegans Hypothetical
protein ZK354.7 protein.
Length = 224
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/54 (25%), Positives = 34/54 (62%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
K + +GD + +++++K+ + E+ KE + +K+ KEE + ++ EK+ ++K
Sbjct: 133 KGDEKGDEKKDEKKEEKKEEKKEEKKEDKKDDKKEAKKEEKKEEKKEEKKEEKK 186
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKR 418
K+E + + + K++D+K D E KE E +K+ KEE + ++ EK+ ++
Sbjct: 146 KEEKKEEKKEEKKEDKK-DDKKEAKKEEKKEEKKEEKKEEKKEEKKEEKKEEK 197
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
K+E + + + K+ D+K + +E+ KE E +K+ KEE + ++ EK + K
Sbjct: 150 KEEKKEEKKEDKKDDKKEAKKEEK-KEEKKEEKKEEKKEEKKEEKKEEKNDENK 202
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 30.7 bits (66), Expect = 1.0
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXX 439
K+E + D + +++D+K+ + +E K +E +K+ KE+D+ K+ +K K+ +
Sbjct: 105 KEEKKEDDKKDEKKDEKKDEKEEDKK---SEDKKEDEKEKDDDKKEDKKDDKKSDNKDDK 161
Query: 440 XXXXXXXXXXXXXXXXXXXXXXXXXD-IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFP 616
+ EEK++ +E EKK + + +D K P P
Sbjct: 162 DDEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEKKEEEKKEEKKEEKKEDEKKVEPK-P 220
Query: 617 SKRRAKTSV 643
+ + S+
Sbjct: 221 GEPKPHISI 229
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/125 (16%), Positives = 51/125 (40%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVSXXXX 439
K EG+ + +++++K+ + +++ +E E ++ K+E + ++ EK+ +K
Sbjct: 77 KSEGKKSDKKEEKKEEKKEEKEDKKEEKKEEKKEDDKKDEKKDEKKDEKEEDKKSEDKKE 136
Query: 440 XXXXXXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPS 619
D E+K ++ ++ E+K++ + K+ K
Sbjct: 137 DEKEKDDDKKEDKKDDKKSDNKDDKDDEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEK 196
Query: 620 KRRAK 634
K K
Sbjct: 197 KEEEK 201
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Frame = +2
Query: 290 IKRQDQKRSDLDEQ---LKEYI------NEWRKQRAKEEDELKRLIEKQAKRKVSXXXXX 442
+++ ++KR L+++ LKE + N+WR+ R K + +KRL + A +
Sbjct: 242 LEQTEEKRCKLEDEVFYLKEKVREIQTQNKWREARNKTDIAVKRLSAEIAASVPNIPENE 301
Query: 443 XXXXXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPSK 622
D++ + RL++ E + + +L+ + ASK P
Sbjct: 302 MSKELRDALEREIDLREQMRFSEEDLKRTQIRLQDVENENEELLKKLSKASKLRPPMIRS 361
Query: 623 RRAKTS 640
R T+
Sbjct: 362 ARLVTA 367
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = +2
Query: 278 DPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQ 409
+P++ + + ++ + +++ +E E RKQR K +E ++ +E+Q
Sbjct: 343 EPDYRQEKSKEETPEEKEKREQSREVRKQRRKLREERRKEVERQ 386
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Frame = +2
Query: 290 IKRQDQKRSDLDEQ---LKEYI------NEWRKQRAKEEDELKRLIEKQAKRKVSXXXXX 442
+++ ++KR L+++ LKE + N+WR+ R K + +KRL + A +
Sbjct: 242 LEQTEEKRCKLEDEVFYLKEKVREIQTQNKWREARNKTDIAVKRLSAEIAASVPNIPENE 301
Query: 443 XXXXXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPSK 622
D++ + RL++ E + + +L+ + ASK P
Sbjct: 302 MSKELRDALEREIDLREQMRFSEEDLKRTQIRLQDVENENEELLKKLSKASKLRPPMIRS 361
Query: 623 RRAKTS 640
R T+
Sbjct: 362 ARLVTA 367
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Frame = +2
Query: 290 IKRQDQKRSDLDEQ---LKEYI------NEWRKQRAKEEDELKRLIEKQAKRKVSXXXXX 442
+++ ++KR L+++ LKE + N+WR+ R K + +KRL + A +
Sbjct: 242 LEQTEEKRCKLEDEVFYLKEKVREIQTQNKWREARNKTDIAVKRLSAEIAASVPNIPENE 301
Query: 443 XXXXXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFPSK 622
D++ + RL++ E + + +L+ + ASK P
Sbjct: 302 MSKELRDALEREIDLREQMRFSEEDLKRTQIRLQDVENENEELLKKLSKASKLRPPMIRS 361
Query: 623 RRAKTS 640
R T+
Sbjct: 362 ARLVTA 367
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = +2
Query: 278 DPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQ 409
+P++ + + ++ + +++ +E E RKQR K +E ++ +E+Q
Sbjct: 343 EPDYRQEKSKEETPEEKEKREQSREVRKQRRKLREERRKEVERQ 386
>Z22173-1|CAA80125.1| 398|Caenorhabditis elegans Hypothetical
protein C15H7.3 protein.
Length = 398
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 251 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVS 427
P+ + EG ++D+K+ D E+ KE RK+ KEE + E+ AKR V+
Sbjct: 64 PSSSGQSEGTTRMDDQKDEKKDDKKEEKKEE----RKEEKKEEVKEPWSEEEPAKRMVA 118
>U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical
protein W05H9.1 protein.
Length = 414
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Frame = +2
Query: 287 FIKRQDQKRSDLDEQLKEYINEWRKQRAK---EEDELKRLIEKQAKRKVSXXXXXXXXXX 457
F + QK+ + + Q +E I +W++ K + +ELK+ I+ AK+K+
Sbjct: 141 FTDKIKQKQEEKEAQRQEQIEKWKQASEKLQQQREELKQQIDA-AKQKLDERRKQKLEEL 199
Query: 458 XXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKD 589
D EK QRL E + +A+ Q + D
Sbjct: 200 KTDLAQVKELVTAEVKRRVD--EKNQRLGEQRENHEALKQQIND 241
>L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical
protein F42H10.7b protein.
Length = 531
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +2
Query: 248 TPAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQ 409
+P P EGD E + R+ +K+ +E L Y+N++ + +EL +++ ++
Sbjct: 142 SPMPFANEEGDNEALNRKRKKKK--EETLTSYLNKYTSEDNASFEELAKVMRER 193
>L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical
protein F42H10.7a protein.
Length = 529
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +2
Query: 248 TPAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQ 409
+P P EGD E + R+ +K+ +E L Y+N++ + +EL +++ ++
Sbjct: 142 SPMPFANEEGDNEALNRKRKKKK--EETLTSYLNKYTSEDNASFEELAKVMRER 193
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = +2
Query: 278 DPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQ 409
+P++ + + ++ + +++ +E E RKQR K +E ++ +E+Q
Sbjct: 343 EPDYRQEKSKEETPEEKEKREQSREVRKQRRKLREERRKEVERQ 386
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 293 KRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKVS 427
KRQD SD E+ + ++W +R K+++ KQ K+ VS
Sbjct: 106 KRQDDSPSDNSEESQSSEDDWDDRRKPRRTVTKKVV-KQTKKAVS 149
>Z81080-4|CAB03087.2| 224|Caenorhabditis elegans Hypothetical
protein F39H2.4 protein.
Length = 224
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 284 EFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQ 409
E ++RQ Q + D +L E +W +++ K DEL +E +
Sbjct: 71 ESLERQLQDLTATDNKLSEQKRDWEERQEKAYDELMSYLENE 112
>Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical
protein T05A10.3 protein.
Length = 406
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +2
Query: 284 EFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
E K Q+Q+R + +++ K + E+ ++ + ++ LKR E++ KR+
Sbjct: 311 EEAKLQEQRRREQEDEHKRRMEEYHRREQERQEALKRR-EEEIKRR 355
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/53 (26%), Positives = 32/53 (60%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKR 418
K + + + + K++D+K++D DE+ K+ + +K +EDE + +K+ K+
Sbjct: 250 KDDDDEEEKDKKKKDKKKNDDDEEDKKKDKKKKKDDDDDEDEDNKKKDKKKKK 302
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 317 DLDEQLK-EYINEWRKQRAKEEDELKRLIEKQAKRK 421
+LD+ L+ + R+QR +E+DE +++IE + KR+
Sbjct: 717 ELDQWLRCPFEERLRRQRKREKDERRKVIEDRKKRR 752
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 317 DLDEQLK-EYINEWRKQRAKEEDELKRLIEKQAKRK 421
+LD+ L+ + R+QR +E+DE +++IE + KR+
Sbjct: 717 ELDQWLRCPFEERLRRQRKREKDERRKVIEDRKKRR 752
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/43 (25%), Positives = 28/43 (65%)
Frame = +2
Query: 293 KRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
+ + +K+ + DE+ ++ R ++ KEE++ KR++E++ + K
Sbjct: 441 EEERKKKEEEDEKRRKAEESERVRKLKEEEKRKRVLEEEMEMK 483
Score = 25.4 bits (53), Expect(2) = 3.7
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = +2
Query: 263 QEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
+ + P + + + + Q+ EY WR + + +E++R E++ K+K
Sbjct: 396 EHSQSAPNYFPHRTRDEIKREVQM-EYERRWRIEEEERLEEIRRKKEEERKKK 447
Score = 21.8 bits (44), Expect(2) = 3.7
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +2
Query: 521 EEKRQRLEEAEKKRQA 568
EE++++ EE EK+R+A
Sbjct: 442 EERKKKEEEDEKRRKA 457
>Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical
protein T05D4.5 protein.
Length = 482
Score = 25.0 bits (52), Expect(2) = 4.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 515 DIEEKRQRLEEAEKKRQAMLQAMKDA 592
D EEK+++ E EKK+ A + KDA
Sbjct: 419 DAEEKKKKDAEDEKKKDAGDEKKKDA 444
Score = 21.8 bits (44), Expect(2) = 4.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +2
Query: 293 KRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
K++D+K+ + + R+ + KEE+E K+ ++ K+K
Sbjct: 376 KKEDKKKPMGWMSTLKMERDERRTKRKEEEEKKKKDAEEKKKK 418
>Z81583-4|CAB04669.1| 323|Caenorhabditis elegans Hypothetical
protein T02G6.4 protein.
Length = 323
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -2
Query: 676 WSCCAPAGHCSNRSFRSSFGWEVGSGL 596
WSCC P + +N S W G L
Sbjct: 278 WSCCIPTTYYNNYSNALKIAWRTGQDL 304
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +2
Query: 254 APKQEGEGDPEFIKRQDQKRSD-----LDEQLKEYINEWRKQRAKEE---DELKRLIEKQ 409
+PK+ GE +F ++Q RSD E + ++ NE + K E DE K +E+Q
Sbjct: 3950 SPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPEDVKSEQPHDEEKPDLERQ 4009
>U40799-1|AAA81479.1| 250|Caenorhabditis elegans Hypothetical
protein F42C5.3 protein.
Length = 250
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 302 DQKRSDLDEQLKEYINEWRKQRAKEEDELK 391
D+KR + E+ K+ ++E K+ KEED+L+
Sbjct: 27 DRKRRETLEKHKKELDELEKKNKKEEDDLR 56
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +2
Query: 254 APKQEGEGDPEFIKRQDQKRSD-----LDEQLKEYINEWRKQRAKEE---DELKRLIEKQ 409
+PK+ GE +F ++Q RSD E + ++ NE + K E DE K +E+Q
Sbjct: 3950 SPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPEDVKSEQPHDEEKPDLERQ 4009
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +2
Query: 299 QDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
+++K+ D +E++K+ +E R +R KEE+E K ++ + K
Sbjct: 158 EEKKKKDEEEKMKK--DEERNKRKKEEEEKKEAKRREDEEK 196
>AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical
protein Y6E2A.8 protein.
Length = 444
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +2
Query: 527 KRQRLEEAEKKRQAMLQAMKDASKTGPNFPSKRRAKTSV*AMPSWSATR 673
KR+ ++ AEK ++A L+ K++SK+ +K++ + + + P SA +
Sbjct: 323 KRETMKRAEKMKEAELKKKKESSKSKEEDKNKKK-EVKIKSAPKTSAKK 370
>AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical
protein Y61A9LA.8 protein.
Length = 740
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +2
Query: 284 EFIKRQDQKRSDLD--EQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
E K+++ KR +L+ KE+ + RK++ + E EL++ E++ +R+
Sbjct: 87 ETSKKEEDKRKELEATAAAKEHEEKRRKEKEEHEKELQKEKEREKERQ 134
>Z78016-4|CAC42335.1| 359|Caenorhabditis elegans Hypothetical
protein R186.7 protein.
Length = 359
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 266 EGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRKV 424
E + D + R++Q + DL++++++ E + E+DE + EK +
Sbjct: 278 ERQLDDQIADREEQLKKDLEDRVRQISEERGDHKQDEDDEYEEEDEKNENEDI 330
>U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical
protein M02B7.5 protein.
Length = 640
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 294 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 398
S+K +G N+STNG N+ RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 293 KRQDQKRSDLDEQLKEYINEW--RKQRAKEEDELKRLIEKQAKRK 421
K++ + R LDE +E + E R+++ + E E + EK+ KR+
Sbjct: 581 KKEARDRDRLDEMERERVREEEERREKERREQERRIAAEKERKRR 625
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 293 KRQDQKRSDLDEQLKEYINEW--RKQRAKEEDELKRLIEKQAKRK 421
K++ + R LDE +E + E R+++ + E E + EK+ KR+
Sbjct: 581 KKEARDRDRLDEMERERVREEEERREKERREQERRIAAEKERKRR 625
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 293 KRQDQKRSDLDEQLKEYINEW--RKQRAKEEDELKRLIEKQAKRK 421
K++ + R LDE +E + E R+++ + E E + EK+ KR+
Sbjct: 581 KKEARDRDRLDEMERERVREEEERREKERREQERRIAAEKERKRR 625
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 293 KRQDQKRSDLDEQLKEYINEW--RKQRAKEEDELKRLIEKQAKRK 421
K++ + R LDE +E + E R+++ + E E + EK+ KR+
Sbjct: 581 KKEARDRDRLDEMERERVREEEERREKERREQERRIAAEKERKRR 625
>Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical
protein F25H5.5 protein.
Length = 725
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 254 APKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDE---LKRLIEKQAKRKV 424
A + E EGD E +D S+ DE E + E+DE LKRL ++ K+K+
Sbjct: 405 AEEAEEEGDDEEEPEEDDIESENDEAETEGVEAPDPNFDDEDDELAILKRLQHQEYKQKI 464
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
K E E + E +KR++++ EQL+E K +A+ E E +R ++++ RK
Sbjct: 1204 KAEREREQERLKREEEEERKRLEQLREA----EKLKAEIEKENERKLQEERTRK 1253
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
K E E + E +KR++++ EQL+E K +A+ E E +R ++++ RK
Sbjct: 1204 KAEREREQERLKREEEEERKRLEQLREA----EKLKAEIEKENERKLQEERTRK 1253
>Z75710-1|CAB00023.1| 327|Caenorhabditis elegans Hypothetical
protein D1081.2 protein.
Length = 327
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKR 394
K+E +G P +K++ + + L++ I E +Q A + +K+
Sbjct: 214 KEEYQGSPTMVKQETTEIDSVTASLQQRIKEAMRQAASNKQAIKK 258
>U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical
protein ZC196.4 protein.
Length = 468
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 269 GEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
GE E +K QD + +EQ E++ + Q LK K+ KR+
Sbjct: 191 GENKSE-LKEQDDSEKECEEQNGEFLEKLENQNKVNSKLLKEARRKREKRR 240
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
K+E E D E I++ + K + +E+ + RKQ+ K+++E KRL E++ K +
Sbjct: 927 KREAE-DKEKIEQLNAKVREKEERSEAR----RKQKEKDDEEEKRLYEEKEKEQ 975
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +2
Query: 260 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
K E E + E +KR++++ EQL+E K +A+ E E +R ++++ RK
Sbjct: 1204 KAEREREQERLKREEEEERKRLEQLREA----EKLKAEIEKENERKLQEERTRK 1253
>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
protein F25G6.2 protein.
Length = 1143
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/39 (23%), Positives = 27/39 (69%)
Frame = +2
Query: 305 QKRSDLDEQLKEYINEWRKQRAKEEDELKRLIEKQAKRK 421
Q++ ++DE++KE +++ ++ + + L+R +K+ +R+
Sbjct: 1090 QQQKNMDEKIKEELHDKERENRERDKRLRREEKKEKERE 1128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,406,852
Number of Sequences: 27780
Number of extensions: 220535
Number of successful extensions: 1379
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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