Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31205
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 176 1e-44
07_01_0071 - 522920-523063,524125-524212,524289-524677 175 2e-44
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 111 5e-25
11_04_0056 + 12942802-12942920,12943022-12943115 58 4e-09
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 35 0.039
04_03_0232 - 13049649-13052807 31 0.64
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 31 0.85
05_03_0238 - 10783451-10783735,10784686-10785762 29 3.4
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 28 4.5
05_01_0301 - 2356880-2357959 28 6.0
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 28 6.0
12_01_0645 - 5468344-5470266 27 7.9
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 27 7.9
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 176 bits (428), Expect = 1e-44
Identities = 80/153 (52%), Positives = 107/153 (69%)
Frame = +1
Query: 1 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRG 180
LL G +VVVVRCE+I +SG R K+K + FLRK N P+ GP HFR+P+KILW+TVRG
Sbjct: 32 LLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRG 91
Query: 181 MIPHKTERGKNALKRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 360
MIPHKT+RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+G
Sbjct: 92 MIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVG 151
Query: 361 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 459
W Y D +R+LE+KRK KA +VAY+++ K++ K
Sbjct: 152 WNYYDTIRELEEKRKEKA--KVAYDRR-KQLAK 181
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 175 bits (427), Expect = 2e-44
Identities = 80/153 (52%), Positives = 105/153 (68%)
Frame = +1
Query: 1 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRG 180
LL G +VVVVRCE++ ISG R K+K + FLRK N P+ GP HFRAPS+I W+TVRG
Sbjct: 32 LLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRG 91
Query: 181 MIPHKTERGKNALKRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 360
MIPHKT RG+ AL L+ +DG PPP+D L+PG YC +G+LS E+G
Sbjct: 92 MIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSKEVG 151
Query: 361 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 459
W Y D +R+LE+KRK KA +VAYE++ K++T+
Sbjct: 152 WNYHDTIRELEEKRKEKA--KVAYERR-KQLTR 181
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 111 bits (266), Expect = 5e-25
Identities = 46/92 (50%), Positives = 60/92 (65%)
Frame = +1
Query: 109 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALKRLRTYDGCPPPFDNXXXXXXXX 288
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 289 XXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVR 384
L+PG YC +G+LS E+GW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 202 RGKNALKRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 369
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 35.1 bits (77), Expect = 0.039
Identities = 25/84 (29%), Positives = 34/84 (40%)
Frame = +1
Query: 10 GNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRGMIP 189
G VVVV E++ +SG KL R R P +I+ VRGM+P
Sbjct: 575 GAFVVVVNAEKVAVSGKKRSQKLYRRHSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP 634
Query: 190 HKTERGKNALKRLRTYDGCPPPFD 261
K G+ L+ Y G P +
Sbjct: 635 -KGRLGRRLFTHLKVYKGAEHPHE 657
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 412 PCPSSCLQAYEQHHGISIQFHGTVCLH 332
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 30.7 bits (66), Expect = 0.85
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 350 MKLDGNTVMLFVSLKTRGRARLLRELPMKRNLRGSPRMLVRRCRRRQHHSLPS 508
MK D +L VS LL+EL ++ LR ++ RCR+ HH + S
Sbjct: 92 MKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAVLLRCRKEDHHHVES 144
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 340 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGE 471
+L +EI RD+ ++ EDK +K A E K ++ K E
Sbjct: 177 KLGNEIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDKSLAE 220
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 465 W*EGVEGDNTIHYHHPILWIQLGLRNYNKNKP 560
W +G++ D + HHP L++ R Y K P
Sbjct: 1055 WWDGLQWDGLENGHHPSLYVPTHSRYYKKKLP 1086
>05_01_0301 - 2356880-2357959
Length = 359
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 383 VSLKTRGRARLLRELPMKRNLRGSPRMLVRRCR-RRQHHSLPSSNP 517
V LKT G LLR +P+ + R+ +R CR R + P + P
Sbjct: 76 VVLKTCGTTPLLRAVPVLLRAAAALRLRLRSCRYSRGEYLFPEAQP 121
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 331 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY-EKKLKRITKDAG 468
H G E G +VVR L D +GKAV+R+ +++L+ + + G
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLG 211
>12_01_0645 - 5468344-5470266
Length = 640
Score = 27.5 bits (58), Expect = 7.9
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 322 NYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY-EKKLKRITKDAGEKVSKATTPF 498
+Y +G L E W+ RD V +LED AV AY EKK K G+ S +
Sbjct: 59 SYSGLGVLLDESLWRLRDAVEELED-----AVDEHAYHEKKTKEREVSDGDLGSSFSKMK 113
Query: 499 TTIIQS 516
+I+S
Sbjct: 114 QRVIKS 119
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 410 RLLRELPMKRNLRGSPRMLVRRCRRRQ 490
R++ EL + RN+R +P+ML+ ++R+
Sbjct: 177 RIVEELGLARNVRLTPKMLIEAIKQRK 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,373
Number of Sequences: 37544
Number of extensions: 323415
Number of successful extensions: 886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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