Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31205
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)                 29   2.0  
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)                 29   3.5  
SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)                   29   3.5  
SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)                    28   4.6  
SB_22075| Best HMM Match : Dickkopf_N (HMM E-Value=0.068)              27   8.1  
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         27   8.1  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +1

Query: 181 MIPHKTERGKNALKRLRTYDGCPPPFD 261
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = +1

Query: 10  GNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRGMIP 189
           G+ VVV+  + I +SG  + NKL                   H +  ++ILW+ V GM+P
Sbjct: 54  GDYVVVINTKHIVLSGTKWDNKLYRHHTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP 113

Query: 190 HKTERGKNALKRLRTYDGCPPPF 258
            K       +KRL  ++    P+
Sbjct: 114 -KNNLRPTWMKRLYLFEDEHHPY 135


>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
          Length = 1266

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +1

Query: 313  PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 486
            PG   C VG+L H   W    + R L   R+  + ++ A   +     + +G+  S++
Sbjct: 866  PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAAAGGRTADQGERSGDSASRS 923


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +2

Query: 347  PMKLDGNTVMLFVSLKTRGRARLL--RELPMKRNLRGSPRMLVRR 475
            P K +GNT    V ++  GR + L  R +P++ N  G P+ LV+R
Sbjct: 1114 PGKAEGNTDKRIVPVENNGRIKQLDKRIIPVENN--GRPKQLVKR 1156


>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
          Length = 622

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 313 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 429
           PG   C VG+L H   W    + R L   R+  + ++ A
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 445


>SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)
          Length = 271

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +1

Query: 304 CLKPGRNYCHVGRL---SHEIGWKYRDVVRKL--EDKRKGKAVKRVAYEKKLKRITKDAG 468
           C KPG+++ HV  +    H    ++ D  R +  +   K  A+K  +Y  KLK + +D G
Sbjct: 106 CYKPGQDFLHVVHVLNRPHIFSSRHHDAYRAIIHDVNEKANALKD-SYISKLKALVQDEG 164


>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
          Length = 443

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 361 WKYR-DVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGYN 528
           W+ R  V++  E K+K +  + +A  KK+K+  K +  + SK + P  +      Y+
Sbjct: 378 WRLRAGVLQAAEMKKKRQKAQSLAERKKIKKEKKKSNPRRSKCSVPGLSCFYQTNYH 434


>SB_22075| Best HMM Match : Dickkopf_N (HMM E-Value=0.068)
          Length = 144

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 58  NFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRGMIPH 192
           ++FR K   M  L + C+ +PA  P    A   +     R  +PH
Sbjct: 62  SWFRKKCHRMRHLHQLCSTSPANSPVFLIARKLLPRMRGRSRVPH 106


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 464  LVRRCRRRQHHSLPSSNPMD 523
            LV+R    QHH+LPS +P D
Sbjct: 1192 LVKRIAGMQHHNLPSPHPED 1211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,268,740
Number of Sequences: 59808
Number of extensions: 368967
Number of successful extensions: 1676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)