Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31205
         (566 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051640-1|AAK93064.1|  205|Drosophila melanogaster GM13948p pro...   223   2e-58
AE014297-307|AAF51987.1|  205|Drosophila melanogaster CG1475-PB ...   223   2e-58
AF251006-1|AAK28427.1| 1500|Drosophila melanogaster host cell fa...    28   7.7  

>AY051640-1|AAK93064.1|  205|Drosophila melanogaster GM13948p
           protein.
          Length = 205

 Score =  223 bits (544), Expect = 2e-58
 Identities = 97/175 (55%), Positives = 127/175 (72%)
 Frame = +1

Query: 1   LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRG 180
           LL+G KV VVRCE++N+SG+F+RNK+K +++LRK CNVNPARGPFHFRAPS+I +K VRG
Sbjct: 29  LLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRG 88

Query: 181 MIPHKTERGKNALKRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 360
           MIPHKT+RG+ AL RLR +DG P P+D               L+  R YC VGRLSHE+G
Sbjct: 89  MIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVG 148

Query: 361 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 525
           W Y+DV++ LE KRK K    + + ++LK++T  A E ++KA  PF  II+SYGY
Sbjct: 149 WHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203


>AE014297-307|AAF51987.1|  205|Drosophila melanogaster CG1475-PB
           protein.
          Length = 205

 Score =  223 bits (544), Expect = 2e-58
 Identities = 97/175 (55%), Positives = 127/175 (72%)
 Frame = +1

Query: 1   LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRG 180
           LL+G KV VVRCE++N+SG+F+RNK+K +++LRK CNVNPARGPFHFRAPS+I +K VRG
Sbjct: 29  LLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRG 88

Query: 181 MIPHKTERGKNALKRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 360
           MIPHKT+RG+ AL RLR +DG P P+D               L+  R YC VGRLSHE+G
Sbjct: 89  MIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVG 148

Query: 361 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 525
           W Y+DV++ LE KRK K    + + ++LK++T  A E ++KA  PF  II+SYGY
Sbjct: 149 WHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203


>AF251006-1|AAK28427.1| 1500|Drosophila melanogaster host cell factor
            HCF protein.
          Length = 1500

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = +2

Query: 323  ITVM*ADCPMKLDGNTVMLFVSLKTRGRARLLRELPMKR----NLRGSPRMLVRRCRRRQ 490
            +TVM  +  M   GN VM+     +         L  K+    N  GSPR +    +   
Sbjct: 919  VTVMSTNTSMAASGNKVMVLPGTSSNNSPATTTALSAKKSFVFNAGGSPRTVTLATKSIN 978

Query: 491  HHSLPSSNPM 520
              S+P S P+
Sbjct: 979  AKSIPQSQPV 988


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,301,965
Number of Sequences: 53049
Number of extensions: 552575
Number of successful extensions: 1484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2213979693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)