Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31205
(566 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 168 3e-42
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 168 3e-42
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 167 3e-42
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 166 8e-42
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si... 33 0.18
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 30 0.94
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ... 29 2.9
At5g19400.1 68418.m02312 expressed protein 28 3.8
At4g03180.1 68417.m00435 expressed protein 28 3.8
At1g53110.1 68414.m06014 expressed protein 27 8.7
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 168 bits (408), Expect = 3e-42
Identities = 79/153 (51%), Positives = 100/153 (65%)
Frame = +1
Query: 1 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRG 180
LL G KVV+VRCE+I +SG R K+K M FLRK N P+ GP HFRAPSKI W+TVRG
Sbjct: 32 LLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRG 91
Query: 181 MIPHKTERGKNALKRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 360
MIPHKT+RG AL RL+ Y+G P P+D L+ G YC +GRLS E+G
Sbjct: 92 MIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVG 151
Query: 361 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 459
W + D +++LE KRK +A V YE+K K++ K
Sbjct: 152 WNHYDTIKELETKRKERA--HVVYERK-KQLNK 181
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 168 bits (408), Expect = 3e-42
Identities = 78/161 (48%), Positives = 104/161 (64%)
Frame = +1
Query: 1 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRG 180
LL G +VVVRCE+I +SG R K+K M FLRK N P+ GP HFRAPSKI W+TVRG
Sbjct: 32 LLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRG 91
Query: 181 MIPHKTERGKNALKRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 360
MIPHKT+RG NAL RL+ ++G P P+D L+ G YC +GRLS E+G
Sbjct: 92 MIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVG 151
Query: 361 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 483
W + D +++LE+KRK +A +K+L ++ A EKV++
Sbjct: 152 WNHYDTIKELENKRKERAQAVYERKKQLSKLRAKA-EKVAE 191
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 167 bits (407), Expect = 3e-42
Identities = 81/163 (49%), Positives = 107/163 (65%), Gaps = 2/163 (1%)
Frame = +1
Query: 1 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRG 180
LL G +VVVVRCE+I +SG R K+K M FLRK N P+ GP HFRAPSKI W+TVRG
Sbjct: 32 LLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRG 91
Query: 181 MIPHKTERGKNALKRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 360
MIPHKT+RG AL RL+ ++G PPP+D L+ G YC +GRLS E+G
Sbjct: 92 MIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVG 151
Query: 361 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK--DAGEKVSK 483
W + D +++LE KRK ++ +V YE+K K++ K EKV++
Sbjct: 152 WNHYDTIKELETKRKERS--QVMYERK-KQLNKLRTKAEKVAE 191
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 166 bits (404), Expect = 8e-42
Identities = 78/153 (50%), Positives = 101/153 (66%)
Frame = +1
Query: 1 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRG 180
LL G VVVVRCE+I +SG R K+K M FLRK N P+ GP HFRAPSKI W+TVRG
Sbjct: 32 LLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRG 91
Query: 181 MIPHKTERGKNALKRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 360
MIPHKT+RG AL RL+ ++G PPP+D L+ G YC +GRLS E+G
Sbjct: 92 MIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVG 151
Query: 361 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 459
W + D +++LE KRK ++ + YE+K K++TK
Sbjct: 152 WNHYDTIKELEVKRKERS--QALYERK-KQLTK 181
>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
similar to ribosomal protein L13 GI:170132 from
[Spinacia oleracea]
Length = 241
Score = 32.7 bits (71), Expect = 0.18
Identities = 24/84 (28%), Positives = 34/84 (40%)
Frame = +1
Query: 10 GNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRGMIP 189
G V+VV E++ +SG KL R R P +I+ VRGM+P
Sbjct: 141 GAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP 200
Query: 190 HKTERGKNALKRLRTYDGCPPPFD 261
K G+ L+ Y G P +
Sbjct: 201 -KGRLGRALFNHLKVYKGPDHPHE 223
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 30.3 bits (65), Expect = 0.94
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = -1
Query: 185 IMPLTVFHRILDGALKWKGPRAGFTLHXLRRNDISLSLFLKKLPEM 48
++ L + H LD + W+G + LH LR+ D+S S+ LK+LP++
Sbjct: 655 LIELNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695
>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 589
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -2
Query: 529 NC-IHRIG*W**MVLSP---STPSHQHPW*SS*VSFHRQLS*QPCPSSCLQAYEQ 377
NC HRIG +L P + SH+HP S SF ++ Q C C+Q+Y Q
Sbjct: 399 NCNSHRIGIDIRCILVPDHFTHESHEHPLFIS-TSFKAEIRCQGCQKECMQSYLQ 452
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -3
Query: 459 LGDPLKFLFIGNSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRH 280
L P F F G + + + F N NF+ ++ T + ++Q + T SSRH
Sbjct: 1000 LNGPANFPFPGKQVPTSQVQADFPYFQNPQ--KDNFVDKNHQSTQLPEQYQGQSTWSSRH 1057
Query: 279 YNTSTV 262
++T+ V
Sbjct: 1058 FDTAHV 1063
>At4g03180.1 68417.m00435 expressed protein
Length = 185
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 391 EDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 483
+DKRKGK+ KR+ E K+ T++ E+V K
Sbjct: 97 DDKRKGKSNKRIGVEDLYKQ-TREEMERVRK 126
>At1g53110.1 68414.m06014 expressed protein
Length = 439
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 382 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTI 507
RKL +K KAV RV E + KR D K KA +++
Sbjct: 316 RKLHEKAAAKAVIRVKKEAEKKRKELDKRAKKKKAVCKSSSV 357
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,680,901
Number of Sequences: 28952
Number of extensions: 258038
Number of successful extensions: 782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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