Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31201
         (390 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...    98   5e-20
UniRef50_Q11BW9 Cluster: Oligopeptide/dipeptide ABC transporter,...    34   0.85 
UniRef50_A4JFI7 Cluster: Putative uncharacterized protein; n=1; ...    33   1.5  
UniRef50_Q3W9X9 Cluster: Putative uncharacterized protein; n=1; ...    32   4.5  
UniRef50_Q2G6A9 Cluster: Putative uncharacterized protein; n=1; ...    31   6.0  
UniRef50_Q4DUB8 Cluster: Putative uncharacterized protein; n=1; ...    31   7.9  

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score = 98.3 bits (234), Expect = 5e-20
 Identities = 50/71 (70%), Positives = 55/71 (77%)
 Frame = +2

Query: 5   RVFLAILPVSDSGAGRRNWERYTPFQYNRVYSTVSPFGYKPGRYVADPSRYDPSRDNCWP 184
           RVFLAI  +S + A      +YTPFQYNRVYSTVSPF YKPGRYVADP RYDPSRDN   
Sbjct: 2   RVFLAIC-LSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNS-G 59

Query: 185 LHLPDNSGAYN 217
            ++PDNSGAYN
Sbjct: 60  RYIPDNSGAYN 70



 Score = 51.2 bits (117), Expect = 7e-06
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +3

Query: 306 RQDLIKYLGDAYKGSTIVPLPGVNPTIP 389
           ++DL KYLGDAYKGS+IVPLP V PTIP
Sbjct: 100 KEDLSKYLGDAYKGSSIVPLPVVKPTIP 127


>UniRef50_Q11BW9 Cluster: Oligopeptide/dipeptide ABC transporter,
           ATPase subunit precursor; n=2; Rhizobiales|Rep:
           Oligopeptide/dipeptide ABC transporter, ATPase subunit
           precursor - Mesorhizobium sp. (strain BNC1)
          Length = 680

 Score = 34.3 bits (75), Expect = 0.85
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 26  PVSDSGAGRRNWERYTPFQYNRVYSTVSPFGYKPGRYVADPSRYD 160
           P+SD G+GRR W R     +   YS++ P     G  +A+P  Y+
Sbjct: 417 PLSDLGSGRRQWRRDVQMIFQDPYSSLDP-RMTIGEIIAEPLSYN 460


>UniRef50_A4JFI7 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia vietnamiensis G4|Rep: Putative
           uncharacterized protein - Burkholderia vietnamiensis
           (strain G4 / LMG 22486) (Burkholderiacepacia (strain
           R1808))
          Length = 537

 Score = 33.5 bits (73), Expect = 1.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 157 ITAWISYIAAWFIAEWRNSRVNSVVLERSVSFPVSAA 47
           ++ W + +A WF AEWR +R     +ER  SF V AA
Sbjct: 60  VSLWFAAVAVWFAAEWREAR----DVERPGSFAVVAA 92


>UniRef50_Q3W9X9 Cluster: Putative uncharacterized protein; n=1;
           Frankia sp. EAN1pec|Rep: Putative uncharacterized
           protein - Frankia sp. EAN1pec
          Length = 455

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 20  ILPVSDSGAGR-RNWERYTPFQYNRVYSTVSPFGYKPGRYVADPSRYDPSR-DNCW 181
           + P S S AG       YT   Y     T S +G +PG    DP+R DP+R D  W
Sbjct: 79  LAPSSGSSAGTGATGPIYTGQAYAGPADTGSSYGGRPGSGYPDPARSDPARSDPAW 134


>UniRef50_Q2G6A9 Cluster: Putative uncharacterized protein; n=1;
           Novosphingobium aromaticivorans DSM 12444|Rep: Putative
           uncharacterized protein - Novosphingobium
           aromaticivorans (strain DSM 12444)
          Length = 1034

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 24/67 (35%), Positives = 31/67 (46%)
 Frame = +2

Query: 14  LAILPVSDSGAGRRNWERYTPFQYNRVYSTVSPFGYKPGRYVADPSRYDPSRDNCWPLHL 193
           L I  +SD+  G R   R T  +Y      VSP G +P R++     +D  RD CW LH 
Sbjct: 425 LFISSLSDNTDGIRGLPRDTVVEY-----LVSP-GQEPTRFI---EAFDQLRDRCWYLHN 475

Query: 194 PDNSGAY 214
            D    Y
Sbjct: 476 RDGDRWY 482


>UniRef50_Q4DUB8 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 301

 Score = 31.1 bits (67), Expect = 7.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 303 PRQDLIKYLGDAYKGSTIVPLPGVN 377
           P Q    YL  A++ ST VPLPGVN
Sbjct: 274 PIQRAYNYLDHAWRASTSVPLPGVN 298


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,112,448
Number of Sequences: 1657284
Number of extensions: 5705124
Number of successful extensions: 16615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16613
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 16143318346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)