Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31201
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    28   0.59 
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    26   2.4  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   4.1  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   4.1  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.5  
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    24   7.2  
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    24   9.5  

>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 122 KPGRYVADPSRYDPSRDN 175
           KPG YV+D + Y P +DN
Sbjct: 235 KPGSYVSDRASYTPQQDN 252


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = -3

Query: 148 WISYIAAWFIAEWRNSRVNSVVLERSVSFPVSAASATVRDRQNCQKDP 5
           W S++ A  +  +     N + LERS    V     +++ ++  ++ P
Sbjct: 159 WDSFVLANVVGNYNTVVFNGITLERSTMHGVETCGGSLQRKKKIRRKP 206


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 95  YSTVSPFGYKPGRYVADPSRYDP 163
           YST S  GY+P    A  +RYDP
Sbjct: 119 YSTQSYTGYEPTSMRAIRARYDP 141


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 139 YIAAWFIAEWRNSRVNSVVLERSVSFPVSAA 47
           YI  WF+A   N   +  VLE  +  P+S+A
Sbjct: 293 YILEWFLALIFNKPPSLSVLELQMPLPISSA 323


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +2

Query: 59  WERYTPFQYNRVYSTVSPFGYKPGRYVADPSRYDPSRDNCWPLHLPDNSGAY 214
           W+RYT        S  + F      Y   PSR  P+  N +P      S A+
Sbjct: 33  WKRYTTPLSTEDGSREAHFAVPSENYADTPSRNTPNSSNGFPSETLVTSSAH 84


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 95  KLGCTGKECIFPSFGGQRHCQRQAELPKRPS 3
           KL   G   +  S GG     R+ +LPKRPS
Sbjct: 45  KLRKLGHNVVLVSSGGIAMGLRRLDLPKRPS 75


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 41  GAGRRNWERYTPFQYN 88
           G   + WE YTPF+ N
Sbjct: 211 GKFHKEWEPYTPFERN 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,443
Number of Sequences: 5004
Number of extensions: 21589
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)