Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31201
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    28   2.3  
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417...    27   7.0  
05_03_0284 + 11599390-11600007,11600109-11600153,11600343-116005...    27   7.0  
05_03_0145 + 8881484-8882377                                           27   7.0  
01_06_1793 - 39916024-39916824                                         27   7.0  
01_06_0138 + 26865895-26865953,26866628-26867870                       27   7.0  
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833     27   7.0  
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740...    26   9.2  

>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 9/14 (64%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
 Frame = -1

Query: 363 GEQWW-IPCKHHQG 325
           GE+WW +PCK H+G
Sbjct: 430 GEEWWNLPCKPHRG 443


>05_05_0062 +
           22039410-22039985,22041467-22041555,22041638-22041770,
           22041864-22042093,22042199-22042675,22042748-22042934,
           22043536-22043574,22043624-22044052
          Length = 719

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 389 GNGRIHAGQGNNGGSLVSITKVFD-EVLPW 303
           G+G +  G G++GG LV   +V D +V+ W
Sbjct: 147 GSGAVGGGGGDDGGRLVKKVEVADADVMGW 176


>05_03_0284 +
           11599390-11600007,11600109-11600153,11600343-11600550,
           11600645-11600726,11601894-11602398
          Length = 485

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/14 (64%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = -1

Query: 363 GEQWW-IPCKHHQG 325
           GE WW +PCK H+G
Sbjct: 194 GEGWWNLPCKPHRG 207


>05_03_0145 + 8881484-8882377
          Length = 297

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 92  VYSTVSPFGYKPGRYVADPSRYDPS 166
           + S +S FGYKPG Y  D S +  S
Sbjct: 60  IISFLSAFGYKPGYYKVDISGHPVS 84


>01_06_1793 - 39916024-39916824
          Length = 266

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 35  DSGAGRRNWERYTPFQYNRVYSTVSPFGYKP 127
           D G   R++  Y  +  N  YS+ +P GY P
Sbjct: 103 DGGERDRSYSNYGGYGNNEGYSSSAPSGYNP 133


>01_06_0138 + 26865895-26865953,26866628-26867870
          Length = 433

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 37  QWRWPPKLGKIHSFPVQPSLLYCFSIRL 120
           QW+W  K      FP+Q    +CF  RL
Sbjct: 402 QWKWSAKCPVSKRFPLQLFTGFCFEPRL 429


>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
          Length = 503

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
 Frame = -1

Query: 363 GEQWW-IPCKHHQG 325
           G++WW +PCK H+G
Sbjct: 216 GQKWWDLPCKPHKG 229


>02_05_1022 +
           33570664-33570976,33572206-33573440,33573873-33574013,
           33574242-33574796,33574914-33575015
          Length = 781

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 164 WGHNGLDQLHSGLVYSRMEKQ*SKLGCTGKECIFPSFGGQRHCQR 30
           WG  G D   S    S    + S  G +G E  + S GGQR+CQ+
Sbjct: 87  WG--GADGGASTPAISNCRPEQSIRGVSGVEMKWESAGGQRNCQQ 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,917,069
Number of Sequences: 37544
Number of extensions: 172817
Number of successful extensions: 484
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)