Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31201
         (390 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)                     27   4.1  
SB_22509| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   4.1  
SB_56138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           26   9.5  
SB_37069| Best HMM Match : Ribosomal_S30 (HMM E-Value=8.5)             26   9.5  
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)           26   9.5  

>SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)
          Length = 817

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 360 EQWWIPCKHHQGI 322
           ++WW+PCKH   +
Sbjct: 312 QKWWLPCKHFMAV 324


>SB_22509| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 752

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 115 EWRN-SRVNSVVLERSVSFPVSAASATVRDRQNCQKD 8
           E+RN  R N +   R+V+FP +A++ TVR  +N + D
Sbjct: 416 EFRNLKRENYLKFLRNVTFPDAASNVTVRFNRNGEVD 452


>SB_56138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 206 QSCPVNVTASSCRGWGHNGLDQLH 135
           QSCP+ + A  C  W H   DQ+H
Sbjct: 301 QSCPLTLQAQPCSVWTH---DQVH 321


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +2

Query: 41  GAGRRNWERYTPFQYNRVYSTVSPFGYKPGRYVADPSRYDPSRDNCWPLHLPDNSG 208
           G G      Y P  Y  +Y+ ++ +G  P ++   P  Y P      P+  P   G
Sbjct: 551 GFGPDGRPMYPPEFYQNMYNAIARYGVPPQQFNQYPPGYTPPHLTRAPMGGPQGIG 606


>SB_37069| Best HMM Match : Ribosomal_S30 (HMM E-Value=8.5)
          Length = 283

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 81  WKGVYLSQFRRPAPLSETGRIAKKTLV 1
           W G+     RRPAP+S   R ++ + V
Sbjct: 48  WPGISTGNERRPAPISSHSRTSRSSSV 74


>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
          Length = 1057

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 112  WRNSRVNSVVLERSVSFPVSAASATVRDRQNCQKDPR 2
            W   + ++ +L R  + P+S+    VRD +     PR
Sbjct: 936  WSPGKDSNTILTRESALPLSSRGGWVRDNRRTPNSPR 972


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,792,512
Number of Sequences: 59808
Number of extensions: 192765
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)