Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31201
(390 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19120.2 68417.m02822 early-responsive to dehydration stress ... 29 1.1
At4g19120.1 68417.m02821 early-responsive to dehydration stress ... 29 1.1
At1g56710.1 68414.m06522 glycoside hydrolase family 28 protein /... 27 3.4
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 4.5
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 27 5.9
At1g48100.1 68414.m05368 glycoside hydrolase family 28 protein /... 27 5.9
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro... 26 7.8
At3g62490.1 68416.m07021 expressed protein hypothetical proteins... 26 7.8
At2g09910.1 68415.m01029 hypothetical protein 26 7.8
>At4g19120.2 68417.m02822 early-responsive to dehydration stress
protein (ERD3) identical to ERD3 protein [Arabidopsis
thaliana] GI:15320410; contains Pfam profile PF03141:
Putative methyltransferase; identical to cDNA ERD3
GI:15320409
Length = 600
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 62 ERYTPFQYNRVYSTVSP-FGYKPGRYVADPSRYDPSRDNCWPLHLP 196
ER+ P ++R V P GYKP P R+ S+D CW ++P
Sbjct: 101 ERHCPPVFDRKQCLVPPPDGYKP------PIRWPKSKDECWYRNVP 140
>At4g19120.1 68417.m02821 early-responsive to dehydration stress
protein (ERD3) identical to ERD3 protein [Arabidopsis
thaliana] GI:15320410; contains Pfam profile PF03141:
Putative methyltransferase; identical to cDNA ERD3
GI:15320409
Length = 600
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 62 ERYTPFQYNRVYSTVSP-FGYKPGRYVADPSRYDPSRDNCWPLHLP 196
ER+ P ++R V P GYKP P R+ S+D CW ++P
Sbjct: 101 ERHCPPVFDRKQCLVPPPDGYKP------PIRWPKSKDECWYRNVP 140
>At1g56710.1 68414.m06522 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
(Glycine max); contains PF00295: Glycosyl hydrolases
family 28 (polygalacturonases)
Length = 434
Score = 27.5 bits (58), Expect = 3.4
Identities = 8/15 (53%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
Frame = -1
Query: 363 GEQWW-IPCKHHQGI 322
G++WW +PCK H+G+
Sbjct: 154 GQKWWNLPCKPHKGL 168
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 40 WRWPPKLGKIHSFPVQPSLLYCFSIRL*TRP 132
WRW K FP+Q +CF RL P
Sbjct: 381 WRWSQKCPVTKKFPLQLFTGFCFEPRLEIAP 411
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 110 PFGYKPGRYVADPSRYDPSRDNCWPLHLP 196
P GY PG Y A P Y P+ P P
Sbjct: 51 PAGYPPGAYPAAPGGYPPAPGGYPPAGYP 79
>At1g48100.1 68414.m05368 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
[Glycine max]; contains PF00295: Glycosyl hydrolases
family 28 (polygalacturonases)
Length = 475
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/14 (57%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Frame = -1
Query: 363 GEQWW-IPCKHHQG 325
G++WW +PCK H+G
Sbjct: 184 GQKWWDLPCKPHRG 197
>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
protein similar to meiotic asynaptic mutant 1
[Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
oleracea var. alboglabra] GI:23506946; contains Pfam
profile PF02301: HORMA domain
Length = 1399
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 53 RNWERYTPFQYNRVYSTVSPFGYKPGRYVADPSRYDPSRD 172
+NWE Y + + S PF + + P RY PS D
Sbjct: 851 KNWEEYYFYVRVDLESYERPFSGRKRMWTEFPDRYRPSPD 890
>At3g62490.1 68416.m07021 expressed protein hypothetical proteins -
Arabidopsis thaliana
Length = 559
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 53 RNWERYTPFQYNRVYSTVSPFGYKPGRYVADPSRYDPSRD 172
+NWE Y + + S PF + + P RY PS D
Sbjct: 142 KNWEEYYFYVRVDLESYERPFSGRKRMWTEFPDRYRPSPD 181
>At2g09910.1 68415.m01029 hypothetical protein
Length = 985
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 53 RNWERYTPFQYNRVYSTVSPFGYKPGRYVADPSRYDPS 166
+NWE Y + + S PF ++ + P RY PS
Sbjct: 260 KNWEEYYFYIRVDLESYERPFSWRKRMWTEFPDRYRPS 297
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,561,409
Number of Sequences: 28952
Number of extensions: 124552
Number of successful extensions: 366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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