Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31200
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0022 - 18992517-18993033,18993119-18993360,18993535-189939...    31   0.33 
01_07_0033 - 40619145-40619658,40619761-40620002,40620178-406205...    31   0.44 
01_07_0034 - 40625755-40626268,40626358-40626599,40627034-406274...    30   0.58 
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989...    30   0.76 
04_03_0793 + 19699355-19699472,19700245-19700633,19700824-197010...    29   1.0  
10_02_0089 - 5138048-5138561,5138864-5139105,5139712-5140079,514...    27   4.1  

>02_04_0022 -
           18992517-18993033,18993119-18993360,18993535-18993923,
           18995447-18995603
          Length = 434

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 309 GRYMIYVK*CPLEDTKRLVT*DRICLNFTYISGLLTHRHSASSQINKI 166
           GR  ++V   P +  KR+V  D  CLN  + + +  HR   SS +  +
Sbjct: 65  GRLKVFVYDLPSKYNKRIVAKDPRCLNHMFAAEIFMHRFLLSSAVRTL 112


>01_07_0033 -
           40619145-40619658,40619761-40620002,40620178-40620566,
           40621586-40621688
          Length = 415

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 309 GRYMIYVK*CPLEDTKRLVT*DRICLNFTYISGLLTHRHSASSQINKI 166
           GR  +YV   P +  K++V  D  CL+  + + +  HR   SS I  +
Sbjct: 47  GRLKVYVYELPTKYNKKMVAKDSRCLSHMFAAEIFMHRFLLSSAIRTL 94


>01_07_0034 -
           40625755-40626268,40626358-40626599,40627034-40627422,
           40628119-40628227
          Length = 417

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 309 GRYMIYVK*CPLEDTKRLVT*DRICLNFTYISGLLTHRHSASSQI 175
           GR  +YV   P +  K+L+  D  CLN  + + +  HR   SS +
Sbjct: 49  GRLKVYVYDLPSKYNKKLLKKDPRCLNHMFAAEIFMHRFLLSSAV 93


>01_07_0009 -
           40397276-40397534,40397637-40398745,40398834-40398932,
           40399043-40399272,40399534-40399585,40399679-40399865,
           40399987-40400193,40400283-40400449,40400804-40401094,
           40401166-40401636
          Length = 1023

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 143 HYRAHHIIIDSW*KVLMIWVL*CSCLNLFFFYLLISRLAL 24
           H+R   ++ ++W  VL++W+L    L  F+ +L ++  +L
Sbjct: 69  HFRGWRVVRETWWWVLLLWIL-AGSLGSFYLFLFMNAQSL 107


>04_03_0793 +
           19699355-19699472,19700245-19700633,19700824-19701065,
           19701150-19701663
          Length = 420

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 309 GRYMIYVK*CPLEDTKRLVT*DRICLNFTYISGLLTHRHSASSQINKI 166
           GR  +++   P +  K++V  D  CLN  + + +  HR   SS +  +
Sbjct: 52  GRLKVFIYDLPRKYNKKMVNKDPRCLNHMFAAEIFMHRFLLSSAVRTL 99


>10_02_0089 -
           5138048-5138561,5138864-5139105,5139712-5140079,
           5140862-5140943
          Length = 401

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 309 GRYMIYVK*CPLEDTKRLVT*DRICLNFTYISGLLTHRHSASSQI 175
           G+  +YV   P +  K +V  D  CL+  + + +  HR   SS I
Sbjct: 33  GKLKVYVYELPPKYNKNIVAKDSRCLSHMFATEIFMHRFLLSSAI 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,571,909
Number of Sequences: 37544
Number of extensions: 163510
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)