Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31200
         (392 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27440.1 68414.m03345 exostosin family protein contains Pfam ...    27   6.0  

>At1g27440.1 68414.m03345 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 412

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 309 GRYMIYVK*CPLEDTKRLVT*DRICLNFTYISGLLTHRHSASSQI 175
           G+  +YV   P +  K+L+  D  CL   + + +  HR   SS +
Sbjct: 44  GKLKVYVYELPSKYNKKLLQKDPRCLTHMFAAEIFMHRFLLSSPV 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,763,520
Number of Sequences: 28952
Number of extensions: 135675
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)