Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31198
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.77 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   2.4  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   5.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.5  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   7.2  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    25   7.2  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    25   7.2  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   9.5  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   9.5  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 320 SGELHLVHWNTKQVPQLLGGGGKTKWTS 403
           S E+H+V WN K V  +L  G  T++T+
Sbjct: 162 SSEVHVVSWNNK-VSHILASGNATEYTT 188


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 460 YRYCLSCLTKAIKLHFASPSTLPSCFHQ 543
           Y YCL C  K++   F+  S    C H+
Sbjct: 548 YYYCLQCECKSLHWRFSDRSNCDECGHK 575


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 199 IAVFVDTPTVARIDDGTRMIDRVPPFQW 116
           I+V+ +TP++A +D  T  ID V  F+W
Sbjct: 331 ISVY-ETPSLALVDKKTIKIDGVQNFEW 357


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 224 LNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTKQVPQLLGGGG 385
           L ND+Y +    C W  +  +G++  +     SG+L    WN K +    GG G
Sbjct: 57  LVNDMYVVDLNTCSWKQVEYQGNQKPIPRYFHSGDL----WNNKLI--FFGGMG 104


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 644 FSGNLYGLKEEKPNPR 597
           FSG+L+  KE+K NP+
Sbjct: 67  FSGSLFSAKEKKDNPK 82


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 49  IPRAAGIRHEGDFSRQKWSFPAAIE 123
           + RA  I HEG F    WS P  IE
Sbjct: 177 LARAQEIPHEGSFCDLMWSDPEDIE 201


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 550 LLDVPRVFDNTTLHRSRGFGFSSF-NP 627
           +LD   + D+TT  RSRGFGF +F NP
Sbjct: 189 VLDCTVMRDSTT-GRSRGFGFLTFKNP 214


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 238 LQITTMALPLGSAQWGGLRTYSGRSLVLRR 327
           LQ   M LP G+ ++GGL  +   SL + +
Sbjct: 326 LQTLLMGLPAGACEFGGLIAFGFLSLFIHK 355


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = -2

Query: 498  LYRLCEA---RKAVPV----QLYRAVGVPTQTINRTLGRLVHLVF 385
            LYR  EA   R+AVP      LYR +G+    +NR   ++V ++F
Sbjct: 1200 LYRDLEALRRRQAVPEWYVDALYRGIGIHHSGLNRRYRQIVEVLF 1244


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 306 TVARSPENYTWFTGTQSKYHNFWEA 380
           TV+R+P +    +G  S   NFWE+
Sbjct: 773 TVSRNPFHNLKISGASSPVSNFWES 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,360
Number of Sequences: 5004
Number of extensions: 69348
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)