Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31198
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydr... 64 1e-10
Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical pr... 58 7e-09
Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical pr... 58 7e-09
U12966-4|AAA20616.1| 365|Caenorhabditis elegans Carbonic anhydr... 50 1e-06
AF000198-1|AAB53054.1| 319|Caenorhabditis elegans Carbonic anhy... 50 2e-06
U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydr... 48 8e-06
U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic anhyd... 44 9e-05
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 32 0.31
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr... 27 8.8
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan... 27 8.8
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella... 27 8.8
>U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydrase
protein 3 protein.
Length = 246
Score = 63.7 bits (148), Expect = 1e-10
Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Frame = +2
Query: 140 NHP--RSIVNPGYCWRV--DENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVD 307
+HP IVN G+ ++ + E+ GG L+ VY+L Q+H HWG + EGSEHT+
Sbjct: 49 DHPIQGDIVNNGHSVQMTPELRSEHPEIYGGGLDQ-VYRLVQYHFHWGENDNEGSEHTLG 107
Query: 308 GRSFSGELHLVHWNTKQVPQLLGGGGKTKWTSRPRVLLMVWVGTPTAR*SCTGTAFRASQ 487
G + ELHLVH + +L G + + L + T R
Sbjct: 108 GLRYPAELHLVHQGVEDPGKLAVVGVFLQLGKEGKALSN--EERVLGKLCNPETVTRVEN 165
Query: 488 RR*SYILLAPRPCQAASTKTAYWTYPGSLTTPPCTGV 598
R S L A K ++W Y GSLTTPPC+ +
Sbjct: 166 VRLSEKLPA--------NKRSFWRYEGSLTTPPCSEI 194
>Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical
protein R01E6.3b protein.
Length = 235
Score = 57.6 bits (133), Expect = 7e-09
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = +2
Query: 209 LKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNT 352
L L + + L Q+H HWG+ + EGSEH +DG+ SGE+H V WNT
Sbjct: 60 LTANHLPSSKFALAQFHAHWGSNSKEGSEHFLDGKQLSGEVHFVFWNT 107
>Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical
protein R01E6.3a protein.
Length = 280
Score = 57.6 bits (133), Expect = 7e-09
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = +2
Query: 209 LKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNT 352
L L + + L Q+H HWG+ + EGSEH +DG+ SGE+H V WNT
Sbjct: 105 LTANHLPSSKFALAQFHAHWGSNSKEGSEHFLDGKQLSGEVHFVFWNT 152
>U12966-4|AAA20616.1| 365|Caenorhabditis elegans Carbonic anhydrase
protein 1 protein.
Length = 365
Score = 50.4 bits (115), Expect = 1e-06
Identities = 45/149 (30%), Positives = 59/149 (39%), Gaps = 5/149 (3%)
Frame = +2
Query: 158 VNPGYCWRVDENGYDSE-----LKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFS 322
VN G RV GY S+ + GPL Y++Q+ H G N GSEHT++GR F
Sbjct: 152 VNTGQMVRV-RIGYSSKKPSVNITSGPLYGYRYRVQRIDFHMGRKNENGSEHTINGRRFP 210
Query: 323 GELHLVHWNTKQVPQLLGGGGKTKWTSRPRVLLMVWVGTPTAR*SCTGTAFRASQRR*SY 502
E+ LV +NT P + VL+ T T S +
Sbjct: 211 MEVQLVAYNTDLYPNFTSASKSPHGIAILSVLVDFGPETNQELIKLTIATASISYKDQRV 270
Query: 503 ILLAPRPCQAASTKTAYWTYPGSLTTPPC 589
L P + TY GSLT+P C
Sbjct: 271 QLADFEPWRLLPFTRDIITYEGSLTSPGC 299
>AF000198-1|AAB53054.1| 319|Caenorhabditis elegans Carbonic
anhydrase protein 6 protein.
Length = 319
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +2
Query: 158 VNPGYCWRVDENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHL 337
VN G + G SEL L + Y L + HW GSEHT+ G ++GE+HL
Sbjct: 102 VNDGNSIWLMREGNSSELAISFLPEEQYHLDAVNFHWATEPMNGSEHTIGGVGYAGEMHL 161
Query: 338 VHWNTK 355
+H NT+
Sbjct: 162 IHRNTR 167
>U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydrase
protein 5 protein.
Length = 310
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = +2
Query: 209 LKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVH 343
++GG L + YKL Q+H HWG + GSEH + + ELHLVH
Sbjct: 102 IQGGGLKHR-YKLAQFHLHWGQNDAVGSEHAMGSLHYPAELHLVH 145
>U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic
anhydrase protein 2 protein.
Length = 337
Score = 44.0 bits (99), Expect = 9e-05
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Frame = +2
Query: 209 LKGGPLNNDVYKLQQWHCHWG-ALNGE-GSEHTVDGRSFSGELHLVHWNTKQVPQLLGGG 382
+ GGP YKL Q H+G A GE GSEHTVD F E+ L+ +N+ P
Sbjct: 88 ITGGPTMPYRYKLHQISVHFGRADEGEKGSEHTVDRVRFPAEIQLLAYNSALYPNFSVAM 147
Query: 383 GKTKWTSRPRVLLMVWVGTPTAR*SCTGTAFRASQRR*SYILLAPRPCQAASTKTAYWTY 562
+ V++ + T T + + + + L +P + Y TY
Sbjct: 148 TSPRGLLAVSVIVDIGKTTSVELRRLTVASQSINYKGQTTNLTDFQPSALLPKTSHYVTY 207
Query: 563 PGSLTTPPC 589
GSLT P C
Sbjct: 208 EGSLTFPGC 216
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +2
Query: 14 TPRGGGRSITSGSPGLQEFGTRVTSRVKSGASLPPLKWRDSVNHPRSIVNPGYCWRVDEN 193
T GR+ +S + +R SR SG+ PP K R S + GYC R D+
Sbjct: 168 TTSRSGRTSSSDRDRHSKRRSRSRSRSSSGSRTPPYKSRSSRRRCKDFEERGYCIRGDQC 227
Query: 194 GY 199
Y
Sbjct: 228 PY 229
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Frame = -2
Query: 405 RLVHLVFPPPPRSCGTCFV--FQ*TRCSSPENERPSTVCSEPSPL----SAPQWQCHCCN 244
++V PPPP + C C P VCS P P+ AP +C C+
Sbjct: 147 QIVAAAMPPPPSAPACCVAAPVPTNPCCQPAPRPAPCVCSAPRPVPCRCGAPPMECPNCD 206
Query: 243 L 241
+
Sbjct: 207 M 207
>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
D2085.1 protein.
Length = 2198
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 430 GRNTHSSIKLYRYCLSCLTKAIKLHFASPST 522
GR HS KL CL K I LH+ +PST
Sbjct: 2038 GRTVHSLAKLL-----CLYKDITLHYVAPST 2063
>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
abnormal protein1 protein.
Length = 1732
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 398 SIWFSPRLPEVVVLALCSSEPGVVLRRTSDRPLYVLSPP 282
SIW++P LPE V E VL R +DR ++ P
Sbjct: 536 SIWYNPDLPEQVTNMKIKGEVEAVL-RDADRTEVIVQEP 573
>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1737
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 398 SIWFSPRLPEVVVLALCSSEPGVVLRRTSDRPLYVLSPP 282
SIW++P LPE V E VL R +DR ++ P
Sbjct: 541 SIWYNPDLPEQVTNMKIKGEVEAVL-RDADRTEVIVQEP 578
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,624,828
Number of Sequences: 27780
Number of extensions: 424844
Number of successful extensions: 1174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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